| functional annotation |
| Function |
PsbP-like protein 2 |
Plant GARDEN Plant GARDEN JBrowse
|
| GO BP |
|
GO:0015979 [list] [network] photosynthesis
|
(167 genes)
|
IEA
|
 |
|
| GO CC |
|
GO:0009654 [list] [network] photosystem II oxygen evolving complex
|
(19 genes)
|
IEA
|
|
|
GO:0019898 [list] [network] extrinsic component of membrane
|
(46 genes)
|
IEA
|
|
|
GO:0009543 [list] [network] chloroplast thylakoid lumen
|
(50 genes)
|
HDA
|
|
|
GO:0009535 [list] [network] chloroplast thylakoid membrane
|
(315 genes)
|
HDA
|
|
|
GO:0009579 [list] [network] thylakoid
|
(509 genes)
|
HDA
|
|
|
GO:0009507 [list] [network] chloroplast
|
(5004 genes)
|
HDA
ISM
|
|
|
| GO MF |
|
GO:0005509 [list] [network] calcium ion binding
|
(132 genes)
|
IEA
|
|
|
| KEGG |
|
|
| Protein |
NP_001031514.2
NP_001078022.1
NP_565906.1
|
| BLAST |
NP_001031514.2
NP_001078022.1
NP_565906.1
|
| Orthologous |
[Ortholog page]
LOC7458602 (ppo)
LOC9267250 (osa)
LOC25485716 (mtr)
LOC100798877 (gma)
LOC100813624 (gma)
LOC100818731 (gma)
LOC101256723 (sly)
LOC103867036 (bra)
LOC123085487 (tae)
LOC123092559 (tae)
LOC123097864 (tae)
LOC123448985 (hvu)
|
Subcellular
localization
wolf |
|
chlo 8,
vacu 1
|
(predict for NP_001031514.2)
|
|
chlo 7,
nucl 1,
cyto 1,
mito 1,
vacu 1,
cyto_nucl 1
|
(predict for NP_001078022.1)
|
|
chlo 4,
nucl 1,
cyto 1,
plas 1,
vacu 1,
cyto_nucl 1,
nucl_plas 1,
cyto_plas 1
|
(predict for NP_565906.1)
|
|
Subcellular
localization
TargetP |
|
chlo 6,
other 3
|
(predict for NP_001031514.2)
|
|
chlo 6,
other 3
|
(predict for NP_001078022.1)
|
|
chlo 5,
other 4
|
(predict for NP_565906.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath00195 |
Photosynthesis |
2 |
 |
Genes directly connected with PnsL1 on the network
| coex z* |
Locus |
Function* |
CoexViewer |
Entrez Gene ID* |
| 11.0 |
PnsL4 |
FK506-binding protein 16-2 |
[detail] |
830126 |
| 10.6 |
NdhN |
oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor |
[detail] |
835938 |
| 10.4 |
Lhca6 |
PSI type II chlorophyll a/b-binding protein (Lhca2*1) |
[detail] |
838498 |
| 9.9 |
AT1G65230 |
transmembrane protein, putative (DUF2358) |
[detail] |
842830 |
| 9.1 |
AT5G27290 |
stress regulated protein |
[detail] |
832787 |
| 8.8 |
NdhM |
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex |
[detail] |
3770591 |
| 8.2 |
CRR3 |
chlororespiratory reduction 3 |
[detail] |
814688 |
| 7.7 |
AT2G32500 |
Stress responsive alpha-beta barrel domain protein |
[detail] |
817811 |
| 7.7 |
AT2G21530 |
SMAD/FHA domain-containing protein |
[detail] |
816692 |
| 7.6 |
NdhO |
NAD(P)H:plastoquinone dehydrogenase complex subunit O |
[detail] |
843827 |
| 7.2 |
AT1G50732 |
uncharacterized protein |
[detail] |
10723115 |
| 6.6 |
HDA14 |
histone deacetylase 14 |
[detail] |
829484 |
| 6.5 |
AT4G13500 |
uncharacterized protein |
[detail] |
826982 |
|
Coexpressed
gene list |
[Coexpressed gene list for PnsL1]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
266979_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
266979_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
266979_at
X axis is samples (xls file), and Y axis is log-expression.
|
At2g39470 Gene
