[←][→] ath   At2g40100 Gene
functional annotation
Function   light harvesting complex photosystem II    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1182 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  ISS  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_001189719.1  NP_181539.1 
BLAST NP_001189719.1  NP_181539.1 
Orthologous [Ortholog page] LHCB4.2 (ath)  LHCB4.1 (ath)  LOC4343583 (osa)  LOC7466067 (ppo)  LOC7487313 (ppo)  LOC7488015 (ppo)  LOC11406674 (mtr)  LOC11422473 (mtr)  LOC100785180 (gma)  LOC100785415 (gma)  LOC100794604 (gma)  LOC100820335 (gma)  LOC101249002 (sly)  LOC103850412 (bra)  LOC103866983 (bra)  LOC103870577 (bra)  LOC123044554 (tae)  LOC123052387 (tae)  LOC123188273 (tae)  LOC123425713 (hvu) 
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for NP_001189719.1)
chlo 4,  plas 4,  golg_plas 3,  golg 1  (predict for NP_181539.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001189719.1)
chlo 7  (predict for NP_181539.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 4
ath00710 Carbon fixation in photosynthetic organisms 3
ath01230 Biosynthesis of amino acids 3
ath00630 Glyoxylate and dicarboxylate metabolism 2
Genes directly connected with LHCB4.3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
6.7 MES18 methyl esterase 18 [detail] 835943
6.0 AT1G16080 nuclear protein [detail] 838178
5.9 CRB chloroplast RNA binding protein [detail] 837455
4.5 AT5G56840 myb-like transcription factor family protein [detail] 835786
Coexpressed
gene list		 [Coexpressed gene list for LHCB4.3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265722_at
265722_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265722_at
265722_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265722_at
265722_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818599      
Refseq ID (protein) NP_001189719.1 
NP_181539.1 


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