[←][→] ath   At2g41340 Gene
functional annotation
Function   RNA polymerase II fifth largest subunit, D    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (159 genes)  IEA  
GO:0033036 [list] [network] macromolecule localization  (624 genes)  IEA  
GO CC
GO:0000418 [list] [network] RNA polymerase IV complex  (16 genes)  IDA  
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (12 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1277 genes)  IEA  
KEGG ath03020 [list] [network] RNA polymerase (52 genes)
Protein NP_001324725.1  NP_001324726.1  NP_181665.1 
BLAST NP_001324725.1  NP_001324726.1  NP_181665.1 
Orthologous [Ortholog page] RPB5E (ath)  NRPE5 (ath)  LOC4349748 (osa)  LOC4351463 (osa)  LOC7458931 (ppo)  LOC7487012 (ppo)  LOC11419143 (mtr)  LOC25489110 (mtr)  LOC100306033 (gma)  LOC100799908 (gma)  LOC100805412 (gma)  LOC101252227 (sly)  LOC101255881 (sly)  LOC102670224 (gma)  LOC103841615 (bra)  LOC103863227 (bra)  LOC103865879 (bra)  LOC120579378 (mtr)  LOC123086370 (tae)  LOC123091673 (tae)  LOC123096606 (tae)  LOC123103030 (tae)  LOC123111219 (tae)  LOC123120306 (tae)  LOC123399999 (hvu)  LOC123448180 (hvu) 
Subcellular
localization
wolf
cyto 5,  extr 2,  nucl 1,  chlo 1,  cysk 1,  nucl_plas 1  (predict for NP_001324725.1)
cyto 4,  nucl 2,  extr 2,  cyto_E.R. 2  (predict for NP_001324726.1)
cyto 4,  nucl 3,  extr 2,  chlo 1,  cysk 1  (predict for NP_181665.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001324725.1)
other 9  (predict for NP_001324726.1)
other 9  (predict for NP_181665.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 3
Genes directly connected with RPB5D on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.6 AT5G19170 NEP-interacting protein, putative (DUF239) [detail] 832037
7.1 HB33 homeobox protein 33 [detail] 843861
6.5 HB31 homeobox protein 31 [detail] 838006
5.2 CIL CCT motif family protein [detail] 828705
4.7 AT5G27890 uncharacterized protein [detail] 832853
Coexpressed
gene list		 [Coexpressed gene list for RPB5D]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266423_at
266423_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266423_at
266423_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266423_at
266423_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818732      
Refseq ID (protein) NP_001324725.1 
NP_001324726.1 
NP_181665.1 


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