[←][→] ath   At2g41500 Gene
functional annotation
Function   WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009560 [list] [network] embryo sac egg cell differentiation  (4 genes)  IMP  
GO:0001709 [list] [network] cell fate determination  (7 genes)  IMP  
GO:0007267 [list] [network] cell-cell signaling  (79 genes)  IMP  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  ISS  
GO:0009553 [list] [network] embryo sac development  (163 genes)  IMP  
GO CC
GO:0005681 [list] [network] spliceosomal complex  (14 genes)  ISS  
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001324961.1  NP_181681.1 
BLAST NP_001324961.1  NP_181681.1 
Orthologous [Ortholog page] AT2G05720 (ath)  LOC4332861 (osa)  LOC7496110 (ppo)  LOC11434456 (mtr)  LOC25479578 (mtr)  LOC25488880 (mtr)  LOC100788948 (gma)  LOC100800927 (gma)  LOC101256472 (sly)  LOC103865889 (bra)  LOC103866560 (bra)  LOC107275966 (osa)  LOC123044268 (tae)  LOC123052147 (tae)  LOC123085934 (tae)  LOC123092118 (tae)  LOC123097378 (tae)  LOC123425403 (hvu)  LOC123448446 (hvu) 
Subcellular
localization
wolf
nucl 4,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001324961.1)
nucl 4,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_181681.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for NP_001324961.1)
chlo 5,  other 4  (predict for NP_181681.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 2
Genes directly connected with LIS on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.4 AT4G32910 nuclear pore complex Nup85-like protein [detail] 829427
7.8 NRPB2 DNA-directed RNA polymerase family protein [detail] 828259
7.8 AT2G36930 zinc finger (C2H2 type) family protein [detail] 818267
7.7 ELO3 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein [detail] 835098
Coexpressed
gene list		 [Coexpressed gene list for LIS]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267102_at
267102_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267102_at
267102_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267102_at
267102_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818748      
Refseq ID (protein) NP_001324961.1 
NP_181681.1 


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