[←][→] ath   AT2G42610 Gene
functional annotation
Function   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)  
GO BP
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IBA  
GO:0007275 [list] [network] multicellular organism development  (2714 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO MF
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
KEGG
Protein NP_565978.1  NP_850374.1 
BLAST NP_565978.1  NP_850374.1 
Orthologous [Ortholog page] LSH3 (ath)  LSH2 (ath)  LSH4 (ath)  LSH1 (ath)  LSH6 (ath)  LSH8 (ath)  LSH7 (ath)  LOC4330024 (osa)  LOC4331099 (osa)  LOC4336401 (osa)  LOC4338491 (osa)  LOC7454352 (ppo)  LOC7455945 (ppo)  LOC7467540 (ppo)  LOC7471962 (ppo)  LOC7474992 (ppo)  LOC7487181 (ppo)  LOC7487704 (ppo)  LOC7489106 (ppo)  LOC9266624 (osa)  LOC11407427 (mtr)  LOC11408401 (mtr)  LOC11408456 (mtr)  LOC11409774 (mtr)  LOC11410018 (mtr)  LOC11410358 (mtr)  LOC11419093 (mtr)  LOC11434608 (mtr)  LOC25484251 (mtr)  LOC25485780 (mtr)  LOC25485963 (mtr)  LOC25499270 (mtr)  LOC25499718 (mtr)  LSH5 (ath)  LOC100192901 (zma)  LOC100217086 (zma)  LOC100244642 (vvi)  LOC100249172 (vvi)  LOC100254926 (vvi)  LOC100257253 (vvi)  LOC100260366 (vvi)  LOC100265705 (vvi)  LOC100266079 (vvi)  LOC100274783 (zma)  LOC100275232 (zma)  LOC100276429 (zma)  LOC100278049 (zma)  LOC100278742 (zma)  LOC100304411 (zma)  LOC100306082 (gma)  LOC100306225 (gma)  LOC100527164 (gma)  LOC100527409 (gma)  LOC100527554 (gma)  LOC100778283 (gma)  LOC100778886 (gma)  LOC100780494 (gma)  LOC100786135 (gma)  LOC100789834 (gma)  LOC100791424 (gma)  LOC100802715 (gma)  LOC100802937 (gma)  LOC100803605 (gma)  LOC100803965 (gma)  LOC100806134 (gma)  LOC100806493 (gma)  LOC100806497 (gma)  LOC100810655 (gma)  LOC100815968 (gma)  TFAM1 (sly)  LOC101246185 (sly)  LOC101247206 (sly)  TFAM2 (sly)  LOC101252299 (sly)  LOC101253723 (sly)  LOC101256738 (sly)  LOC101260873 (sly)  LOC101261831 (sly)  LOC101262247 (sly)  LOC101263979 (sly)  LOC102663941 (gma)  LOC103636537 (zma)  LOC103651051 (zma)  LOC103828755 (bra)  LOC103832357 (bra)  LOC103833736 (bra)  LOC103837296 (bra)  LOC103843480 (bra)  LOC103843985 (bra)  LOC103845277 (bra)  LOC103848911 (bra)  LOC103851635 (bra)  LOC103853147 (bra)  LOC103854635 (bra)  LOC103858024 (bra)  LOC103859037 (bra)  LOC103865110 (bra)  LOC103865960 (bra)  LOC103866652 (bra)  LOC103867894 (bra)  LOC103867981 (bra)  LOC103874577 (bra)  LOC104879291 (vvi)  LOC107276238 (osa)  LOC107278610 (osa) 
Subcellular
localization
wolf
nucl 9  (predict for NP_565978.1)
nucl 9  (predict for NP_850374.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_565978.1)
other 6,  chlo 3  (predict for NP_850374.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with LSH10 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.4 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 821908
7.7 LSH1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 832941
6.1 AT5G22580 Stress responsive A/B Barrel Domain-containing protein [detail] 832321
6.1 AGL24 AGAMOUS-like 24 [detail] 828556
5.0 LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 817672
4.2 AT4G31620 Transcriptional factor B3 family protein [detail] 829290
4.2 AT3G08660 Phototropic-responsive NPH3 family protein [detail] 820013
3.9 AT5G22460 alpha/beta-Hydrolases superfamily protein [detail] 832307
3.2 AT3G22410 Sec14p-like phosphatidylinositol transfer family protein [detail] 821809
Coexpressed
gene list		 [Coexpressed gene list for LSH10]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263498_at
263498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263498_at
263498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263498_at
263498_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818861      
Refseq ID (protein) NP_565978.1 
NP_850374.1 


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