[←][→] ath   At2g42610 Gene
functional annotation
Function   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009299 [list] [network] mRNA transcription  (13 genes)  ISS  
GO:0010374 [list] [network] stomatal complex development  (75 genes)  IEA  
GO:0019760 [list] [network] glucosinolate metabolic process  (201 genes)  IEA  
GO:0090698 [list] [network] post-embryonic plant morphogenesis  (221 genes)  ISS  
GO:0003002 [list] [network] regionalization  (227 genes)  IEA  
GO:0009642 [list] [network] response to light intensity  (373 genes)  IEA  
GO:0048869 [list] [network] cellular developmental process  (1335 genes)  IEA  
GO:0043436 [list] [network] oxoacid metabolic process  (1714 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM ISS  
GO MF
KEGG
Protein NP_565978.1  NP_850374.1 
BLAST NP_565978.1  NP_850374.1 
Orthologous [Ortholog page] LSH3 (ath)  LSH2 (ath)  LSH4 (ath)  LSH1 (ath)  LSH6 (ath)  LSH8 (ath)  LSH7 (ath)  LOC4328416 (osa)  LOC4330024 (osa)  LOC4331099 (osa)  LOC4336401 (osa)  LOC4338491 (osa)  LOC4341811 (osa)  LOC7454352 (ppo)  LOC7455905 (ppo)  LOC7455945 (ppo)  LOC7458006 (ppo)  LOC7458242 (ppo)  LOC7460096 (ppo)  LOC7467540 (ppo)  LOC7470206 (ppo)  LOC7471962 (ppo)  LOC7474992 (ppo)  LOC7480386 (ppo)  LOC7487181 (ppo)  LOC7487704 (ppo)  LOC7489106 (ppo)  LOC7496798 (ppo)  LOC9266624 (osa)  LOC11407427 (mtr)  LOC11408401 (mtr)  LOC11408456 (mtr)  LOC11409774 (mtr)  LOC11410018 (mtr)  LOC11410358 (mtr)  LOC11419093 (mtr)  LOC11434608 (mtr)  LOC18095487 (ppo)  LOC18102467 (ppo)  LOC25484251 (mtr)  LOC25485780 (mtr)  LOC25485963 (mtr)  LOC25493337 (mtr)  LOC25499270 (mtr)  LOC25499718 (mtr)  LSH9 (ath)  LSH5 (ath)  LOC100306082 (gma)  LOC100306225 (gma)  LOC100527164 (gma)  LOC100527409 (gma)  LOC100527554 (gma)  LOC100775798 (gma)  LOC100775838 (gma)  LOC100778283 (gma)  LOC100778886 (gma)  LOC100780494 (gma)  LOC100786135 (gma)  LOC100789834 (gma)  LOC100791424 (gma)  LOC100802715 (gma)  LOC100802937 (gma)  LOC100803605 (gma)  LOC100803965 (gma)  LOC100806134 (gma)  LOC100806493 (gma)  LOC100806497 (gma)  LOC100810350 (gma)  LOC100810655 (gma)  LOC100815968 (gma)  TFAM1 (sly)  LOC101244207 (sly)  LOC101246185 (sly)  LOC101247206 (sly)  TFAM2 (sly)  LOC101252299 (sly)  LOC101253723 (sly)  LOC101256738 (sly)  LOC101260873 (sly)  LOC101261831 (sly)  LOC101262247 (sly)  LOC101263979 (sly)  LOC102663941 (gma)  LOC103828755 (bra)  LOC103832357 (bra)  LOC103837296 (bra)  LOC103843480 (bra)  LOC103843985 (bra)  LOC103845278 (bra)  LOC103845279 (bra)  LOC103848911 (bra)  LOC103850046 (bra)  LOC103851635 (bra)  LOC103853147 (bra)  LOC103853659 (bra)  LOC103854635 (bra)  LOC103858024 (bra)  LOC103859037 (bra)  LOC103861005 (bra)  LOC103865110 (bra)  LOC103865960 (bra)  LOC103866652 (bra)  LOC103867894 (bra)  LOC103867981 (bra)  LOC103874577 (bra)  LOC107276238 (osa)  LOC107278201 (osa)  LOC107278610 (osa)  LOC117125638 (bra)  LOC123041251 (tae)  LOC123045668 (tae)  LOC123046119 (tae)  LOC123049257 (tae)  LOC123052627 (tae)  LOC123053999 (tae)  LOC123058740 (tae)  LOC123074939 (tae)  LOC123127737 (tae)  LOC123128934 (tae)  LOC123136756 (tae)  LOC123137510 (tae)  LOC123144860 (tae)  LOC123146052 (tae)  LOC123149104 (tae)  LOC123159994 (tae)  LOC123166451 (tae)  LOC123181080 (tae)  LOC123181711 (tae)  LOC123185303 (tae)  LOC123189888 (tae)  LOC123402509 (hvu)  LOC123403258 (hvu)  LOC123409615 (hvu)  LOC123411667 (hvu)  LOC123412451 (hvu)  LOC123427243 (hvu)  LOC123430078 (hvu)  LOC123440575 (hvu)  LOC123444893 (hvu) 
Subcellular
localization
wolf
nucl 9  (predict for NP_565978.1)
nucl 9  (predict for NP_850374.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for NP_565978.1)
other 6,  chlo 3  (predict for NP_850374.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with LSH10 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.5 LSH4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 821908
8.2 LSH1 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 832941
6.6 CYP708A3 cytochrome P450, family 708, subfamily A, polypeptide 3 [detail] 844185
6.0 LSH3 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [detail] 817672
6.0 AGL24 AGAMOUS-like 24 [detail] 828556
5.0 AT5G22460 alpha/beta-Hydrolases superfamily protein [detail] 832307
Coexpressed
gene list		 [Coexpressed gene list for LSH10]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
263498_at
263498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
263498_at
263498_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
263498_at
263498_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818861      
Refseq ID (protein) NP_565978.1 
NP_850374.1 


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