[←][→] ath   At2g43010 Gene
functional annotation
Function   phytochrome interacting factor 4    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010244 [list] [network] response to low fluence blue light stimulus by blue low-fluence system  (9 genes)  IDA  
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IGI  
GO:0010600 [list] [network] regulation of auxin biosynthetic process  (16 genes)  IDA IMP  
GO:0009704 [list] [network] de-etiolation  (17 genes)  IMP  
GO:0009638 [list] [network] phototropism  (30 genes)  IMP  
GO:0010928 [list] [network] regulation of auxin mediated signaling pathway  (40 genes)  IDA  
GO:0010017 [list] [network] red or far-red light signaling pathway  (52 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:1990841 [list] [network] promoter-specific chromatin binding  (15 genes)  IPI  
GO:0046983 [list] [network] protein dimerization activity  (421 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1277 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04075 [list] [network] Plant hormone signal transduction (291 genes)
Protein NP_001323426.1  NP_001323427.1  NP_001323428.1  NP_565991.2  NP_850381.1 
BLAST NP_001323426.1  NP_001323427.1  NP_001323428.1  NP_565991.2  NP_850381.1 
Orthologous [Ortholog page] PIL6 (ath)  LOC7464824 (ppo)  LOC7480707 (ppo)  LOC25490555 (mtr)  LOC100784531 (gma)  LOC100800166 (gma)  PIF4B (gma)  PIF4A (gma)  LOC101252303 (sly)  LOC103841766 (bra)  LOC103858039 (bra)  LOC103866034 (bra) 
Subcellular
localization
wolf
vacu 5,  nucl 4,  chlo 1,  golg 1  (predict for NP_001323426.1)
nucl 10  (predict for NP_001323427.1)
nucl 10  (predict for NP_001323428.1)
nucl 10  (predict for NP_565991.2)
nucl 10  (predict for NP_850381.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001323426.1)
other 6  (predict for NP_001323427.1)
other 7  (predict for NP_001323428.1)
other 6  (predict for NP_565991.2)
other 6  (predict for NP_850381.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 5
ath04712 Circadian rhythm - plant 2
ath04075 Plant hormone signal transduction 2
Genes directly connected with PIF4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.1 PIL6 phytochrome interacting factor 3-like 6 [detail] 825075
7.1 PRR7 pseudo-response regulator 7 [detail] 831793
6.4 LHCB2.2 photosystem II light harvesting complex protein 2.2 [detail] 815055
6.2 PIL5 phytochrome interacting factor 3-like 5 [detail] 816538
Coexpressed
gene list		 [Coexpressed gene list for PIF4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265248_at
265248_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265248_at
265248_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265248_at
265248_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818903      
Refseq ID (protein) NP_001323426.1 
NP_001323427.1 
NP_001323428.1 
NP_565991.2 
NP_850381.1 


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