[←][→] ath   AT2G46610 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein  
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (30 genes)  IBA  
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (38 genes)  IBA  
GO CC
GO:0016607 [list] [network] nuclear speck  (86 genes)  IBA  
GO:0005681 [list] [network] spliceosomal complex  (142 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (192 genes)
Protein NP_001325235.1  NP_001325236.1  NP_182184.1  NP_973702.1 
BLAST NP_001325235.1  NP_001325236.1  NP_182184.1  NP_973702.1 
Orthologous [Ortholog page] LOC542174 (zma)  LOC542693 (zma)  RS31 (ath)  LOC4334964 (osa)  LOC7492794 (ppo)  LOC7497271 (ppo)  LOC11445062 (mtr)  LOC100192821 (zma)  LOC100255266 (vvi)  LOC100797709 (gma)  LOC100801043 (gma)  LOC101258786 (sly)  LOC101266564 (sly)  LOC103866451 (bra) 
Subcellular
localization
wolf
nucl 4,  extr 4,  cyto 1,  mito 1  (predict for NP_001325235.1)
nucl 4,  extr 4,  cyto 1,  mito 1  (predict for NP_001325236.1)
nucl 8,  cyto 2  (predict for NP_182184.1)
nucl 10  (predict for NP_973702.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001325235.1)
scret 9  (predict for NP_001325236.1)
other 8,  mito 3  (predict for NP_182184.1)
other 7  (predict for NP_973702.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
Genes directly connected with RS31a on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.2 RS31 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 825359
5.9 RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 [detail] 818311
5.5 AT1G01920 SET domain-containing protein [detail] 839313
5.0 ATRAD17 RADIATION SENSITIVE 17 [detail] 836745
4.8 AT4G17440 chromogranin (DUF1639) [detail] 827455
3.6 HSFA3 heat shock transcription factor A3 [detail] 831749
Coexpressed
gene list		 [Coexpressed gene list for RS31a]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265449_at
265449_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265449_at
265449_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265449_at
265449_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819273      
Refseq ID (protein) NP_001325235.1 
NP_001325236.1 
NP_182184.1 
NP_973702.1 


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