[←][→] ath   At2g46830 Gene
functional annotation
Function   circadian clock associated 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0042754 [list] [network] negative regulation of circadian rhythm  (3 genes)  IMP  
GO:0010378 [list] [network] temperature compensation of the circadian clock  (4 genes)  IMP  
GO:0048574 [list] [network] long-day photoperiodism, flowering  (19 genes)  IGI  
GO:0043254 [list] [network] regulation of protein-containing complex assembly  (25 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (123 genes)  IEP IGI IMP TAS  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (205 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (272 genes)  IMP  
GO:0009408 [list] [network] response to heat  (287 genes)  IEP  
GO:0009409 [list] [network] response to cold  (472 genes)  IGI  
GO:0010243 [list] [network] response to organonitrogen compound  (591 genes)  IEP  
GO:0010468 [list] [network] regulation of gene expression  (2177 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0019904 [list] [network] protein domain specific binding  (4 genes)  ISS  
GO:0000987 [list] [network] cis-regulatory region sequence-specific DNA binding  (49 genes)  IDA  
GO:0043565 [list] [network] sequence-specific DNA binding  (890 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1277 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath04712 [list] [network] Circadian rhythm - plant (39 genes)
Protein NP_001318437.1  NP_850460.1  NP_850461.1 
BLAST NP_001318437.1  NP_850460.1  NP_850461.1 
Orthologous [Ortholog page] CCA1 (bra) 
Subcellular
localization
wolf
nucl 9  (predict for NP_001318437.1)
nucl 10  (predict for NP_850460.1)
nucl 9  (predict for NP_850461.1)
Subcellular
localization
TargetP
other 6,  chlo 4  (predict for NP_001318437.1)
other 9  (predict for NP_850460.1)
other 6,  chlo 4  (predict for NP_850461.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
Genes directly connected with CCA1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
22.4 LHY Homeodomain-like superfamily protein [detail] 839341
17.2 AT3G12320 uncharacterized protein [detail] 820411
17.1 AT3G54500 agglutinin-like protein [detail] 824615
13.0 RVE8 Homeodomain-like superfamily protein [detail] 820117
10.9 BBX19 B-box type zinc finger family protein [detail] 830051
10.6 STH salt tolerance homologue [detail] 817696
10.6 COL2 CONSTANS-like 2 [detail] 821298
10.3 RVE1 Homeodomain-like superfamily protein [detail] 831595
10.2 ATH13 ABC2 homolog 13 [detail] 836618
10.0 BBX18 B-box zinc finger family protein [detail] 816671
6.9 AT5G15950 Adenosylmethionine decarboxylase family protein [detail] 831452
6.4 AT3G13040 myb-like HTH transcriptional regulator family protein [detail] 820490
6.1 NF-YA4 nuclear factor Y, subunit A4 [detail] 818037
5.8 AT3G55580 Regulator of chromosome condensation (RCC1) family protein [detail] 824723
Coexpressed
gene list		 [Coexpressed gene list for CCA1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266719_at
266719_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266719_at
266719_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266719_at
266719_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819296      
Refseq ID (protein) NP_001318437.1 
NP_850460.1 
NP_850461.1 


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