[][] ath   AT2G47560 Gene
functional annotation
Function   RING/U-box superfamily protein
GO BP
GO:0016567 [list] [network] protein ubiquitination  (624 genes)  IBA IEA  
GO CC
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0031625 [list] [network] ubiquitin protein ligase binding  (54 genes)  IBA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0016740 [list] [network] transferase activity  (3833 genes)  IEA  
KEGG
Protein NP_182278.1 
BLAST NP_182278.1 
Orthologous [Ortholog page] ATL5 (ath)LOC25499605 (mtr)LOC100800433 (gma)LOC100855330 (vvi)LOC102665377 (gma)LOC102669188 (gma)LOC103830366 (bra)LOC103842073 (bra)LOC103843699 (bra)LOC103866364 (bra)
Subcellular
localization
wolf
cyto 2,  extr 2,  nucl 1,  plas 1,  nucl_plas 1,  cyto_E.R. 1  (predict for NP_182278.1)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for NP_182278.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT2G47560 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
5.2 AT4G18340 Glycosyl hydrolase superfamily protein [detail] 827561
5.2 ATL5 AtL5 [detail] 825443
4.9 AT1G64620 Dof-type zinc finger DNA-binding family protein [detail] 842770
Coexpressed
gene list
[Coexpressed gene list for AT2G47560]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245171_at
245171_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245171_at
245171_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
245171_at
245171_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 819369    
Refseq ID (protein) NP_182278.1 


The preparation time of this page was 0.2 [sec].