[←][→] ath   At2g47640 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001078076.1  NP_566107.1  NP_850477.1  NP_973710.1 
BLAST NP_001078076.1  NP_566107.1  NP_850477.1  NP_973710.1 
Orthologous [Ortholog page] AT3G62840 (ath)  LOC4338385 (osa)  LOC7478843 (ppo)  LOC7491301 (ppo)  LOC11425290 (mtr)  LOC11426500 (mtr)  LOC100500203 (gma)  LOC100792526 (gma)  LOC100793233 (gma)  LOC101246377 (sly)  LOC103830369 (bra)  LOC103842086 (bra)  LOC103862772 (bra)  LOC123063612 (tae)  LOC123072757 (tae)  LOC123080932 (tae)  LOC123093863 (tae)  LOC123099084 (tae)  LOC123106044 (tae)  LOC123441091 (hvu)  LOC123449942 (hvu) 
Subcellular
localization
wolf
cyto 4,  chlo 3,  extr 2,  nucl 1,  chlo_mito 1  (predict for NP_001078076.1)
cyto 4,  chlo 3,  extr 2,  nucl 1,  chlo_mito 1  (predict for NP_566107.1)
cyto 4,  extr 3,  chlo 2,  nucl 1  (predict for NP_850477.1)
cyto 4,  extr 3,  chlo 2,  nucl 1  (predict for NP_973710.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078076.1)
other 8  (predict for NP_566107.1)
other 8  (predict for NP_850477.1)
other 8  (predict for NP_973710.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03018 RNA degradation 4
ath03020 RNA polymerase 3
Genes directly connected with AT2G47640 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.7 AT1G20580 Small nuclear ribonucleoprotein family protein [detail] 838647
8.3 LSM8 Small nuclear ribonucleoprotein family protein [detail] 842881
8.2 AT2G18740 Small nuclear ribonucleoprotein family protein [detail] 816389
7.4 PFD1 PREFOLDIN 1 [detail] 815304
6.8 TO2 thioredoxin O2 [detail] 839988
6.5 LSM6A Small nuclear ribonucleoprotein family protein [detail] 825150
6.1 NRPB9B RNA polymerases M/15 Kd subunit [detail] 827321
Coexpressed
gene list		 [Coexpressed gene list for AT2G47640]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
266482_at
266482_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
266482_at
266482_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
266482_at
266482_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819377      
Refseq ID (protein) NP_001078076.1 
NP_566107.1 
NP_850477.1 
NP_973710.1 


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