| functional annotation |
| Function |
RING/U-box superfamily protein |
|
| GO BP |
|
GO:0090227 [list] [network] regulation of red or far-red light signaling pathway
|
(1 genes)
|
IMP
|
 |
|
GO:0009585 [list] [network] red, far-red light phototransduction
|
(54 genes)
|
IEA
|
|
|
GO:0010218 [list] [network] response to far red light
|
(54 genes)
|
IMP
|
|
|
GO:2000028 [list] [network] regulation of photoperiodism, flowering
|
(63 genes)
|
IMP
|
|
|
GO:0010114 [list] [network] response to red light
|
(74 genes)
|
IMP
|
|
|
GO:0007623 [list] [network] circadian rhythm
|
(111 genes)
|
IEP
|
|
|
GO:0009908 [list] [network] flower development
|
(447 genes)
|
IEA
|
|
|
GO:0010629 [list] [network] negative regulation of gene expression
|
(539 genes)
|
IMP
|
|
|
GO:0016567 [list] [network] protein ubiquitination
|
(624 genes)
|
IEA
|
|
|
GO:0010468 [list] [network] regulation of gene expression
|
(2484 genes)
|
IMP
|
|
|
| GO CC |
|
| GO MF |
|
GO:0004842 [list] [network] ubiquitin-protein transferase activity
|
(434 genes)
|
IDA
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_001324431.1
NP_850478.1
|
| BLAST |
NP_001324431.1
NP_850478.1
|
| Orthologous |
[Ortholog page]
LOC103866352 (bra)
|
Subcellular
localization
wolf |
|
nucl 4,
mito 3,
chlo 2,
cysk_nucl 2,
nucl_plas 2
|
(predict for NP_001324431.1)
|
|
nucl 9,
mito 1,
plas 1,
mito_plas 1
|
(predict for NP_850478.1)
|
|
Subcellular
localization
TargetP |
|
other 9
|
(predict for NP_001324431.1)
|
|
other 9
|
(predict for NP_850478.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath04144 |
Endocytosis |
3 |
 |
Genes directly connected with RFI2 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 7.7 |
AT5G14540 |
basic salivary proline-rich-like protein (DUF1421) |
[detail] |
831305 |
| 7.3 |
AT4G32760 |
ENTH/VHS/GAT family protein |
[detail] |
829412 |
| 6.7 |
bHLH121 |
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
[detail] |
821523 |
| 6.3 |
AT5G66050 |
Wound-responsive family protein |
[detail] |
836735 |
| 5.2 |
LOG2 |
RING/U-box superfamily protein |
[detail] |
820135 |
| 5.2 |
BEH2 |
BES1/BZR1 homolog 2 |
[detail] |
829831 |
|
Coexpressed
gene list |
[Coexpressed gene list for RFI2]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
266513_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
266513_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
266513_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT2G47700 Gene
