[←][→] ath   At3g01150 Gene
functional annotation
Function   polypyrimidine tract-binding protein 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (8 genes)  IMP  
GO:0043484 [list] [network] regulation of RNA splicing  (21 genes)  IDA  
GO:0006417 [list] [network] regulation of translation  (50 genes)  IEP  
GO:0009846 [list] [network] pollen germination  (80 genes)  IGI  
GO:0009845 [list] [network] seed germination  (99 genes)  IMP  
GO CC
GO:0000932 [list] [network] P-body  (32 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  HDA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  HDA IDA  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG
Protein NP_001319439.1  NP_001327636.1  NP_001327637.1  NP_186764.1 
BLAST NP_001319439.1  NP_001327636.1  NP_001327637.1  NP_186764.1 
Orthologous [Ortholog page] PTB2 (ath)  LOC4326619 (osa)  LOC4332960 (osa)  LOC4345664 (osa)  LOC7453843 (ppo)  LOC7495985 (ppo)  LOC11420325 (mtr)  LOC11425189 (mtr)  LOC18097705 (ppo)  LOC25482365 (mtr)  LOC100778533 (gma)  LOC100788927 (gma)  LOC100792308 (gma)  LOC100810102 (gma)  LOC100813651 (gma)  LOC100819659 (gma)  LOC101251347 (sly)  LOC101251752 (sly)  LOC103857097 (bra)  LOC103870954 (bra)  LOC112323233 (ppo)  LOC123061506 (tae)  LOC123070150 (tae)  LOC123085922 (tae)  LOC123091964 (tae)  LOC123097400 (tae)  LOC123154346 (tae)  LOC123160611 (tae)  LOC123168850 (tae)  LOC123413547 (hvu)  LOC123443897 (hvu)  LOC123448524 (hvu) 
Subcellular
localization
wolf
extr 6,  chlo 2,  mito 1,  E.R. 1,  pero 1  (predict for NP_001319439.1)
extr 6,  chlo 2,  nucl 1,  mito 1  (predict for NP_001327636.1)
chlo 6,  mito 3,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_001327637.1)
chlo 5,  nucl 2,  mito 2  (predict for NP_186764.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_001319439.1)
scret 8  (predict for NP_001327636.1)
other 6  (predict for NP_001327637.1)
other 6  (predict for NP_186764.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03420 Nucleotide excision repair 2
Genes directly connected with PTB1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.9 AT1G14570 UBX domain-containing protein [detail] 838019
5.4 AT5G63200 tetratricopeptide repeat (TPR)-containing protein [detail] 836441
5.3 AT5G17440 LUC7 related protein [detail] 831610
Coexpressed
gene list		 [Coexpressed gene list for PTB1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259280_at
259280_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259280_at
259280_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259280_at
259280_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821129      
Refseq ID (protein) NP_001319439.1 
NP_001327636.1 
NP_001327637.1 
NP_186764.1 


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