[][] ath   AT3G04500 Gene
functional annotation
Function   RNA-binding (RRM/RBD/RNP motifs) family protein
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (172 genes)  IBA  
GO CC
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IBA  
KEGG
Protein NP_001327711.1  NP_001327712.1  NP_187100.1 
BLAST NP_001327711.1  NP_001327712.1  NP_187100.1 
Orthologous [Ortholog page] LOC4330022 (osa)LOC4346363 (osa)LOC7474624 (ppo)LOC11416641 (mtr)LOC100193774 (zma)LOC100241581 (vvi)LOC100246648 (vvi)LOC100272487 (zma)LOC100791946 (gma)LOC100800281 (gma)LOC100807693 (gma)LOC101246335 (sly)LOC101246619 (sly)LOC101250408 (sly)LOC103848913 (bra)
Subcellular
localization
wolf
nucl 9,  nucl_plas 6  (predict for NP_001327711.1)
nucl 4,  chlo 4,  nucl_plas 4,  plas 1  (predict for NP_001327712.1)
nucl 10  (predict for NP_187100.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001327711.1)
chlo 7  (predict for NP_001327712.1)
chlo 7  (predict for NP_187100.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 2
Genes directly connected with AT3G04500 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.8 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family protein [detail] 828017
6.0 AT3G59800 stress response protein [detail] 825149
6.0 AT5G63460 SAP domain-containing protein [detail] 836465
5.7 AT1G49590 C2H2 and C2HC zinc fingers superfamily protein [detail] 841383
Coexpressed
gene list
[Coexpressed gene list for AT3G04500]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258595_at
258595_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258595_at
258595_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
258595_at
258595_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 819606    
Refseq ID (protein) NP_001327711.1 
NP_001327712.1 
NP_187100.1 


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