[][] ath   AT3G05560 Gene
functional annotation
Function   Ribosomal L22e protein family
GO BP
GO:0002181 [list] [network] cytoplasmic translation  (53 genes)  IBA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (136 genes)  IDA  
GO:0022626 [list] [network] cytosolic ribosome  (317 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IBA  
KEGG ath03010 [list] [network] Ribosome (356 genes)
Protein NP_001078112.1  NP_187207.1  NP_974229.1 
BLAST NP_001078112.1  NP_187207.1  NP_974229.1 
Orthologous [Ortholog page] AT5G27770 (ath)LOC4332802 (osa)LOC4344261 (osa)LOC7475906 (ppo)LOC7487786 (ppo)LOC11412472 (mtr)LOC11426422 (mtr)LOC11429584 (mtr)LOC100192778 (zma)LOC100258955 (vvi)LOC100260136 (vvi)LOC100261409 (vvi)LOC100266503 (vvi)LOC100305544 (gma)LOC100305556 (gma)LOC100499714 (gma)LOC100499952 (gma)LOC100500073 (gma)LOC100790071 (gma)LOC101245494 (sly)LOC101245794 (sly)LOC101258008 (sly)LOC103849917 (bra)LOC103859100 (bra)LOC103870812 (bra)LOC103874512 (bra)
Subcellular
localization
wolf
cyto 6,  nucl 2,  cysk_nucl 1,  mito 1,  plas 1,  mito_plas 1  (predict for NP_001078112.1)
cyto 6,  nucl 2,  cysk_nucl 1,  mito 1,  plas 1,  mito_plas 1  (predict for NP_187207.1)
cyto 6,  nucl 2,  cysk_nucl 1,  mito 1,  plas 1,  mito_plas 1  (predict for NP_974229.1)
Subcellular
localization
TargetP
other 7,  mito 3,  scret 3  (predict for NP_001078112.1)
other 7,  mito 3,  scret 3  (predict for NP_187207.1)
other 7,  mito 3,  scret 3  (predict for NP_974229.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
Genes directly connected with AT3G05560 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
14.4 AT2G34480 Ribosomal protein L18ae/LX family protein [detail] 818011
14.1 RPL24A ribosomal protein L24 [detail] 818234
14.0 AT2G01250 Ribosomal protein L30/L7 family protein [detail] 814652
11.4 AT3G58700 Ribosomal L5P family protein [detail] 825039
Coexpressed
gene list
[Coexpressed gene list for AT3G05560]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259112_at
259112_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259112_at
259112_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
259112_at
259112_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 819722    
Refseq ID (protein) NP_001078112.1 
NP_187207.1 
NP_974229.1 


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