[←][→] ath   At3g06530 Gene
functional annotation
Function   ARM repeat superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (96 genes)
Protein NP_001189828.1  NP_001189829.1  NP_001326372.1  NP_001326373.1  NP_187305.5 
BLAST NP_001189828.1  NP_001189829.1  NP_001326372.1  NP_001326373.1  NP_187305.5 
Orthologous [Ortholog page] LOC4336577 (osa)  LOC11431978 (mtr)  LOC18097079 (ppo)  LOC100796965 (gma)  LOC100798087 (gma)  LOC101267297 (sly)  LOC103859164 (bra)  LOC103870740 (bra)  LOC123046413 (tae)  LOC123054255 (tae)  LOC123190147 (tae)  LOC123427577 (hvu) 
Subcellular
localization
wolf
plas 6,  nucl 1,  vacu 1,  mito 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001189828.1)
plas 6,  nucl 1,  vacu 1,  mito 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001189829.1)
plas 6,  nucl 1,  vacu 1,  mito 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001326372.1)
plas 6,  nucl 1,  vacu 1,  mito 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_001326373.1)
plas 6,  nucl 1,  vacu 1,  mito 1,  E.R. 1,  cyto_nucl 1,  cysk_nucl 1  (predict for NP_187305.5)
Subcellular
localization
TargetP
scret 4,  chlo 4  (predict for NP_001189828.1)
scret 4,  chlo 4  (predict for NP_001189829.1)
scret 4,  chlo 4  (predict for NP_001326372.1)
scret 4,  chlo 4  (predict for NP_001326373.1)
scret 4,  chlo 4  (predict for NP_187305.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03020 RNA polymerase 2
Genes directly connected with AT3G06530 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
18.6 AT3G11964 RIBOSOMAL RNA PROCESSING 5 [detail] 820370
17.7 NRPA1 nuclear RNA polymerase A1 [detail] 824935
14.8 NRPA2 nuclear RNA polymerase A2 [detail] 839872
14.8 AT4G04940 transducin family protein / WD-40 repeat family protein [detail] 825833
13.8 AT2G34357 ARM repeat superfamily protein [detail] 2745580
13.7 NOV Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [detail] 827009
13.1 EMB2788 ribosome 60S biogenesis amino-terminal protein [detail] 828809
11.8 AT4G30990 ARM repeat superfamily protein [detail] 829224
11.4 AT5G64420 DNA polymerase V family [detail] 836563
9.7 AT1G77550 tubulin-tyrosine ligase [detail] 844091
Coexpressed
gene list		 [Coexpressed gene list for AT3G06530]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258505_at
258505_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258505_at
258505_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258505_at
258505_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819831      
Refseq ID (protein) NP_001189828.1 
NP_001189829.1 
NP_001326372.1 
NP_001326373.1 
NP_187305.5 


The preparation time of this page was 0.1 [sec].