ATTED-II : GeneID search result

[←][→] ath AT3G07590 Gene

functional annotation

Function

Small nuclear ribonucleoprotein family protein

GO BP

GO:0000387 [list] [network] spliceosomal snRNP assembly	(17 genes)	IBA
GO:0035194 [list] [network] posttranscriptional gene silencing by RNA	(130 genes)	IMP

GO CC

GO:0034715 [list] [network] pICln-Sm protein complex	(4 genes)	IBA
GO:0034719 [list] [network] SMN-Sm protein complex	(4 genes)	IBA
GO:0000243 [list] [network] commitment complex	(7 genes)	IBA
GO:0005687 [list] [network] U4 snRNP	(9 genes)	IBA
GO:0005682 [list] [network] U5 snRNP	(15 genes)	IBA
GO:0005685 [list] [network] U1 snRNP	(17 genes)	IBA
GO:0005689 [list] [network] U12-type spliceosomal complex	(18 genes)	IBA
GO:0005686 [list] [network] U2 snRNP	(32 genes)	IBA
GO:0071013 [list] [network] catalytic step 2 spliceosome	(48 genes)	IBA
GO:0016607 [list] [network] nuclear speck	(86 genes)	IDA
GO:0005730 [list] [network] nucleolus	(477 genes)	IDA
GO:0005774 [list] [network] vacuolar membrane	(624 genes)	IDA
GO:0005829 [list] [network] cytosol	(3506 genes)	IDA
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA ISM

GO MF

GO:0003723 [list] [network] RNA binding

(1790 genes)

IBA

KEGG

ath03040 [list] [network] Spliceosome (192 genes)

Protein

NP_001189837.1 NP_001326434.1 NP_187416.1

BLAST

NP_001189837.1 NP_001326434.1 NP_187416.1

Orthologous

[Ortholog page] LOC4329810 (osa) LOC4336118 (osa) LOC7480704 (ppo) LOC11420807 (mtr) LOC25499104 (mtr) LOC100256258 (vvi) LOC100258386 (vvi) LOC100281963 (zma) LOC100284787 (zma) LOC100286216 (zma) LOC100778485 (gma) LOC100792809 (gma) LOC100793721 (gma) LOC100819089 (gma) LOC101248611 (sly) LOC101251485 (sly) LOC103849211 (bra) LOC103858735 (bra) LOC103859234 (bra) LOC103870651 (bra)

Subcellular
localization
wolf

cyto 7, chlo 1, nucl 1, mito 1, extr 1, chlo_mito 1	(predict for NP_001189837.1)
cyto 5, nucl 2, chlo 1, mito 1, extr 1	(predict for NP_001326434.1)
cyto 7, chlo 1, nucl 1, mito 1, extr 1, chlo_mito 1	(predict for NP_187416.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001189837.1)
other 7	(predict for NP_001326434.1)
other 6	(predict for NP_187416.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03018	RNA degradation	2
ath03010	Ribosome	2

Genes directly connected with AT3G07590 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.5	AT3G55605	Mitochondrial glycoprotein family protein	[detail]	824726
7.3	AT2G18740	Small nuclear ribonucleoprotein family protein	[detail]	816389
6.8	RPL3P	ribosomal protein L3 plastid	[detail]	821011
6.3	AT3G05810	IGR motif protein	[detail]	819750
5.6	LSM3A	Small nuclear ribonucleoprotein family protein	[detail]	838714

Coexpressed
gene list

[Coexpressed gene list for AT3G07590]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259225_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259225_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259225_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	819950
Refseq ID (protein)	NP_001189837.1
	NP_001326434.1
	NP_187416.1

The preparation time of this page was 0.2 [sec].