[←][→] ath   At3g07590 Gene
functional annotation
Function   Small nuclear ribonucleoprotein family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0035194 [list] [network] RNA-mediated post-transcriptional gene silencing  (92 genes)  IMP  
GO CC
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001189837.1  NP_001326434.1  NP_187416.1 
BLAST NP_001189837.1  NP_001326434.1  NP_187416.1 
Orthologous [Ortholog page] AT4G02840 (ath)  LOC4329810 (osa)  LOC4336118 (osa)  LOC7480704 (ppo)  LOC11420807 (mtr)  LOC25499104 (mtr)  LOC100792809 (gma)  LOC100793721 (gma)  LOC100819089 (gma)  LOC101248611 (sly)  LOC101251485 (sly)  LOC103849211 (bra)  LOC103858735 (bra)  LOC103859234 (bra)  LOC103870651 (bra)  LOC123045720 (tae)  LOC123053594 (tae)  LOC123127567 (tae)  LOC123137209 (tae)  LOC123144642 (tae)  LOC123189490 (tae)  LOC123405972 (hvu)  LOC123426973 (hvu) 
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_001189837.1)
cyto 5,  nucl 2,  chlo 1,  mito 1,  extr 1  (predict for NP_001326434.1)
cyto 7,  chlo 1,  nucl 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_187416.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001189837.1)
other 7  (predict for NP_001326434.1)
other 6  (predict for NP_187416.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
Genes directly connected with AT3G07590 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.1 NRPB12 DNA directed RNA polymerase, 7 kDa subunit [detail] 834103
8.0 AT3G55605 Mitochondrial glycoprotein family protein [detail] 824726
7.8 RPL3P ribosomal protein L3 plastid [detail] 821011
7.6 AT3G05810 IGR motif protein [detail] 819750
6.4 AT1G19240 uncharacterized protein [detail] 838507
Coexpressed
gene list		 [Coexpressed gene list for AT3G07590]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259225_at
259225_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259225_at
259225_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259225_at
259225_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819950      
Refseq ID (protein) NP_001189837.1 
NP_001326434.1 
NP_187416.1 


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