| functional annotation |
| Function |
3'-5'-exoribonuclease family protein |
|
| GO BP |
|
GO:0034473 [list] [network] U1 snRNA 3'-end processing
|
(4 genes)
|
IBA
|
 |
|
GO:0034476 [list] [network] U5 snRNA 3'-end processing
|
(4 genes)
|
IBA
|
|
|
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process
|
(4 genes)
|
IBA
|
|
|
GO:0071038 [list] [network] nuclear polyadenylation-dependent tRNA catabolic process
|
(7 genes)
|
IBA
|
|
|
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
|
(8 genes)
|
IBA
|
|
|
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process
|
(9 genes)
|
IBA
|
|
|
GO:0034475 [list] [network] U4 snRNA 3'-end processing
|
(10 genes)
|
IBA
|
|
|
GO:0034427 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
|
(12 genes)
|
IBA
|
|
|
GO:0071028 [list] [network] nuclear mRNA surveillance
|
(14 genes)
|
IBA
|
|
|
GO:0043928 [list] [network] exonucleolytic catabolism of deadenylated mRNA
|
(16 genes)
|
IBA
|
|
|
GO:0016075 [list] [network] rRNA catabolic process
|
(17 genes)
|
IBA
|
|
|
| GO CC |
|
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)
|
(12 genes)
|
IBA
|
|
|
GO:0000176 [list] [network] nuclear exosome (RNase complex)
|
(13 genes)
|
IBA
|
|
|
GO:0005737 [list] [network] cytoplasm
|
(14855 genes)
|
ISM
|
|
|
| GO MF |
|
| KEGG |
ath03018 [list] [network] RNA degradation (113 genes) |
 |
| Protein |
NP_001319497.1
NP_566318.1
|
| BLAST |
NP_001319497.1
NP_566318.1
|
| Orthologous |
[Ortholog page]
LOC4352037 (osa)
LOC7456004 (ppo)
LOC11406638 (mtr)
LOC25482505 (mtr)
LOC100261229 (vvi)
LOC100806953 (gma)
LOC100818134 (gma)
LOC100856959 (zma)
LOC101268414 (sly)
LOC103626486 (zma)
LOC103849117 (bra)
LOC103870639 (bra)
|
Subcellular
localization
wolf |
|
cyto 6,
cysk 2,
mito 1,
extr 1,
pero 1
|
(predict for NP_001319497.1)
|
|
cyto 6,
cysk 2,
mito 1,
extr 1,
pero 1
|
(predict for NP_566318.1)
|
|
Subcellular
localization
TargetP |
|
other 5
|
(predict for NP_001319497.1)
|
|
other 5
|
(predict for NP_566318.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath03018 |
RNA degradation |
5 |
 |
| ath03008 |
Ribosome biogenesis in eukaryotes |
2 |
 |
Genes directly connected with AT3G07750 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 10.1 |
AT5G15550 |
Transducin/WD40 repeat-like superfamily protein |
[detail] |
831408 |
| 10.1 |
AT3G07860 |
Ubiquitin-like superfamily protein |
[detail] |
819977 |
| 9.9 |
AT3G46210 |
Ribosomal protein S5 domain 2-like superfamily protein |
[detail] |
823766 |
| 9.8 |
AT2G25355 |
PNAS-3-like protein |
[detail] |
817074 |
| 9.2 |
GFA2 |
gametophytic factor 2 |
[detail] |
834854 |
| 9.0 |
AT5G64680 |
mediator-associated protein |
[detail] |
836589 |
| 8.3 |
AT4G38150 |
Pentatricopeptide repeat (PPR) superfamily protein |
[detail] |
829971 |
| 8.2 |
RPC14 |
RNApolymerase 14 kDa subunit |
[detail] |
817503 |
| 8.1 |
AT3G61100 |
Putative endonuclease or glycosyl hydrolase |
[detail] |
825282 |
| 7.9 |
AT1G14300 |
ARM repeat superfamily protein |
[detail] |
837991 |
| 7.3 |
RRP41L |
3'-5'-exoribonuclease family protein |
[detail] |
828858 |
| 5.6 |
AT3G25430 |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
[detail] |
822127 |
|
Coexpressed
gene list |
[Coexpressed gene list for AT3G07750]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
259227_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
259227_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
259227_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT3G07750 Gene
