[][] ath   AT3G07820 Gene
functional annotation
Function   Pectin lyase-like superfamily protein
GO BP
GO:0071555 [list] [network] cell wall organization  (538 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (995 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  IEA ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (52 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  IEA  
KEGG
Protein NP_187439.1 
BLAST NP_187439.1 
Orthologous [Ortholog page] LOC542387 (zma)LOC732772 (zma)AT2G15450 (ath)AT2G15460 (ath)AT2G15470 (ath)AT2G26620 (ath)AT2G33160 (ath)AT2G40310 (ath)AT3G07830 (ath)AT3G07840 (ath)AT3G07850 (ath)AT3G14040 (ath)AT4G13760 (ath)AT4G18180 (ath)AT5G48140 (ath)AT1G17150 (ath)AT1G43080 (ath)AT1G43090 (ath)AT1G43100 (ath)AT1G78400 (ath)LOC4323970 (osa)LOC4328617 (osa)LOC4341242 (osa)LOC4341243 (osa)LOC4341514 (osa)LOC4341515 (osa)LOC4345285 (osa)LOC7468605 (ppo)LOC7477987 (ppo)LOC7481681 (ppo)LOC7491350 (ppo)LOC11415149 (mtr)LOC11422898 (mtr)LOC11427911 (mtr)LOC11434881 (mtr)LOC25490499 (mtr)LOC25500883 (mtr)LOC100191230 (zma)LOC100242022 (vvi)LOC100242658 (vvi)LOC100243609 (vvi)LOC100247162 (vvi)LOC100247792 (vvi)LOC100251285 (vvi)LOC100254136 (vvi)LOC100259750 (vvi)LOC100264306 (vvi)LOC100264944 (vvi)LOC100267512 (vvi)LOC100273711 (zma)LOC100273946 (zma)LOC100285881 (zma)LOC100779447 (gma)LOC100779556 (gma)LOC100780097 (gma)LOC100780628 (gma)LOC100784156 (gma)LOC100788863 (gma)LOC100795460 (gma)LOC100810484 (gma)LOC100812594 (gma)LOC100819348 (gma)LOC101244096 (sly)LOC101245486 (sly)LOC101248339 (sly)LOC101248624 (sly)LOC101249384 (sly)LOC101249539 (sly)LOC101268588 (sly)LOC103626843 (zma)LOC103626848 (zma)LOC103629730 (zma)LOC103629733 (zma)LOC103629734 (zma)LOC103629735 (zma)LOC103629743 (zma)LOC103631311 (zma)LOC103639332 (zma)LOC103653359 (zma)LOC103828990 (bra)LOC103831485 (bra)LOC103832320 (bra)LOC103849010 (bra)LOC103849020 (bra)LOC103849039 (bra)LOC103854518 (bra)LOC103857474 (bra)LOC103857926 (bra)LOC103858095 (bra)LOC103858475 (bra)LOC103859243 (bra)LOC103859244 (bra)LOC103859245 (bra)LOC103860974 (bra)LOC103863172 (bra)LOC103865247 (bra)LOC103865787 (bra)MF16 (bra)LOC103872502 (bra)LOC103874929 (bra)LOC109121790 (vvi)LOC109123473 (vvi)
Subcellular
localization
wolf
extr 6,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for NP_187439.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_187439.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 4
Genes directly connected with AT3G07820 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
20.7 VGD1 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819318
20.3 PGA4 polygalacturonase 4 [detail] 839391
20.2 AT5G39880 transmembrane protein [detail] 833985
19.7 AT3G01270 Pectate lyase family protein [detail] 821142
19.3 AT3G01240 splicing regulatory glutamine/lysine-rich-like protein [detail] 821219
17.0 DAF1 F-box family protein [detail] 825396
16.6 AT5G48140 Pectin lyase-like superfamily protein [detail] 834866
16.5 sks14 SKU5 similar 14 [detail] 842005
14.3 AT3G05610 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819727
14.0 AT5G45880 Pollen Ole e 1 allergen and extensin family protein [detail] 834628
11.2 sks13 SKU5 similar 13 [detail] 820540
10.6 BGAL11 beta-galactosidase 11 [detail] 829653
10.4 AT3G28750 hypothetical protein [detail] 822507
8.6 AT2G02720 Pectate lyase family protein [detail] 814801
7.8 AT5G47000 Peroxidase superfamily protein [detail] 834746
7.8 AT2G47050 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 819319
6.3 AT5G54095 proteoglycan-like protein [detail] 835496
5.3 PLIM2a GATA type zinc finger transcription factor family protein [detail] 819188
Coexpressed
gene list
[Coexpressed gene list for AT3G07820]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258639_at
258639_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258639_at
258639_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
258639_at
258639_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 819973    
Refseq ID (protein) NP_187439.1 


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