[←][→] ath   At3g07820 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (844 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (68 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_187439.1 
BLAST NP_187439.1 
Orthologous [Ortholog page] AT2G15450 (ath)  AT2G15460 (ath)  AT2G15470 (ath)  AT2G26620 (ath)  AT2G33160 (ath)  AT2G40310 (ath)  AT3G07830 (ath)  AT3G07840 (ath)  AT3G07850 (ath)  AT3G14040 (ath)  AT4G13760 (ath)  AT5G48140 (ath)  AT1G17150 (ath)  AT1G43080 (ath)  AT1G43090 (ath)  AT1G43100 (ath)  AT1G78400 (ath)  LOC4323970 (osa)  LOC4328617 (osa)  LOC4341242 (osa)  LOC4341243 (osa)  LOC4341514 (osa)  LOC4341515 (osa)  LOC7468605 (ppo)  LOC7477987 (ppo)  LOC7491350 (ppo)  LOC11415149 (mtr)  LOC11422898 (mtr)  LOC11427911 (mtr)  LOC11434881 (mtr)  LOC18105348 (ppo)  LOC18108395 (ppo)  LOC18108396 (ppo)  LOC18108397 (ppo)  LOC18109572 (ppo)  LOC18109574 (ppo)  LOC18109575 (ppo)  LOC25490499 (mtr)  LOC25500883 (mtr)  LOC100779447 (gma)  LOC100779556 (gma)  LOC100780097 (gma)  LOC100780628 (gma)  LOC100784156 (gma)  LOC100788863 (gma)  LOC100795460 (gma)  LOC100810484 (gma)  LOC100812594 (gma)  LOC100819348 (gma)  LOC101244096 (sly)  LOC101245486 (sly)  LOC101248339 (sly)  LOC101248624 (sly)  LOC101249384 (sly)  LOC101249539 (sly)  LOC101266692 (sly)  LOC101268588 (sly)  LOC103828990 (bra)  LOC103831485 (bra)  LOC103832320 (bra)  LOC103849010 (bra)  LOC103849020 (bra)  LOC103849039 (bra)  LOC103857474 (bra)  LOC103857926 (bra)  LOC103858095 (bra)  LOC103858475 (bra)  LOC103859243 (bra)  LOC103859244 (bra)  LOC103859245 (bra)  LOC103863172 (bra)  LOC103865247 (bra)  LOC103865787 (bra)  MF16 (bra)  LOC103870630 (bra)  LOC103872502 (bra)  LOC103874929 (bra)  LOC117132119 (bra)  LOC117132121 (bra)  LOC117132135 (bra)  LOC123132586 (tae)  LOC123136728 (tae)  LOC123144207 (tae)  LOC123148487 (tae)  LOC123152443 (tae)  LOC123152448 (tae)  LOC123159918 (tae)  LOC123160021 (tae)  LOC123160409 (tae)  LOC123160455 (tae)  LOC123166690 (tae)  LOC123166829 (tae)  LOC123166897 (tae)  LOC123168013 (tae)  LOC123402122 (hvu)  LOC123411381 (hvu)  LOC123411397 (hvu)  LOC123413477 (hvu)  LOC123439836 (hvu) 
Subcellular
localization
wolf
extr 6,  nucl 2,  cyto 2,  cyto_nucl 2  (predict for NP_187439.1)
Subcellular
localization
TargetP
scret 8  (predict for NP_187439.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 7
ath00053 Ascorbate and aldarate metabolism 3
Genes directly connected with AT3G07820 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
19.7 PGA4 polygalacturonase 4 [detail] 839391
19.0 AT5G39880 uncharacterized protein [detail] 833985
18.3 AT3G01270 Pectate lyase family protein [detail] 821142
18.2 AT3G01240 splicing regulatory glutamine/lysine-rich-like protein [detail] 821219
16.6 VGD1 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819318
16.0 AT5G48140 Pectin lyase-like superfamily protein [detail] 834866
14.8 DAF1 F-box family protein [detail] 825396
13.5 AT3G05610 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819727
13.5 sks11 SKU5 similar 11 [detail] 820539
13.5 RALFL4 ralf-like 4 [detail] 839721
12.6 AT5G45880 Pollen Ole e 1 allergen and extensin family protein [detail] 834628
11.3 sks13 SKU5 similar 13 [detail] 820540
10.6 AT3G28750 uncharacterized protein [detail] 822507
10.2 BGAL11 beta-galactosidase 11 [detail] 829653
8.9 AT2G02720 Pectate lyase family protein [detail] 814801
8.2 AT2G47050 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 819319
7.9 AT5G47000 Peroxidase superfamily protein [detail] 834746
Coexpressed
gene list		 [Coexpressed gene list for AT3G07820]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258639_at
258639_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258639_at
258639_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258639_at
258639_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819973      
Refseq ID (protein) NP_187439.1 


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