[←][→] ath   At3g07860 Gene
functional annotation
Function   Ubiquitin-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (7 genes)  IEA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_001325550.1  NP_001325551.1  NP_187443.2 
BLAST NP_001325550.1  NP_001325551.1  NP_187443.2 
Orthologous [Ortholog page] LOC4337305 (osa)  LOC7490613 (ppo)  LOC11446596 (mtr)  LOC100815924 (gma)  LOC101252038 (sly)  LOC103859246 (bra)  LOC123046961 (tae)  LOC123054791 (tae)  LOC123190632 (tae)  LOC123428014 (hvu) 
Subcellular
localization
wolf
cyto 4,  nucl 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001325550.1)
cyto 4,  nucl 3,  chlo 1,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001325551.1)
cyto 4,  nucl 3,  mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_187443.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001325550.1)
other 8  (predict for NP_001325551.1)
other 8  (predict for NP_187443.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
Genes directly connected with AT3G07860 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.4 AT3G07750 3'-5'-exoribonuclease family protein [detail] 819966
8.9 AT3G46210 Ribosomal protein S5 domain 2-like superfamily protein [detail] 823766
8.8 AT5G64680 mediator-associated protein [detail] 836589
8.2 AT3G61100 Putative endonuclease or glycosyl hydrolase [detail] 825282
5.6 AT5G61880 Protein Transporter, Pam16 [detail] 836309
4.3 AT5G01175 [detail] 5008193
Coexpressed
gene list		 [Coexpressed gene list for AT3G07860]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258687_at
258687_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258687_at
258687_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258687_at
258687_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 819977      
Refseq ID (protein) NP_001325550.1 
NP_001325551.1 
NP_187443.2 


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