ATTED-II : GeneID search result

[←][→] ath At3g08840 Gene

functional annotation

Function

D-alanine-D-alanine ligase family

Plant GARDEN Plant GARDEN JBrowse

GO BP

GO CC

GO:0009507 [list] [network] chloroplast	(5004 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISM

GO MF

KEGG

Protein

NP_001319501.1 NP_001319502.1 NP_001326473.1 NP_001326474.1 NP_001326475.1 NP_001326476.1 NP_001326477.1 NP_001326478.1 NP_001326479.1 NP_001326480.1 NP_566334.1 NP_974258.1 NP_974259.1

BLAST

NP_001319501.1 NP_001319502.1 NP_001326473.1 NP_001326474.1 NP_001326475.1 NP_001326476.1 NP_001326477.1 NP_001326478.1 NP_001326479.1 NP_001326480.1 NP_566334.1 NP_974258.1 NP_974259.1

Orthologous

[Ortholog page] LOC4344370 (osa) LOC7468075 (ppo) LOC11407566 (mtr) LOC100775955 (gma) LOC100819595 (gma) LOC101268046 (sly) LOC103830077 (bra) LOC103859329 (bra) LOC123043572 (tae) LOC123051441 (tae) LOC123187386 (tae) LOC123425193 (hvu)

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001319501.1)
chlo 4, nucl 3, cyto 2, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for NP_001319502.1)
cyto 4, cysk 2, cyto_nucl 2, chlo 2, cyto_pero 2, cyto_E.R. 2	(predict for NP_001326473.1)
cyto 4, chlo 2, nucl 2, cysk_plas 1, plas 1, cysk 1, chlo_mito 1	(predict for NP_001326474.1)
chlo 4, cyto 4, nucl 1, cysk 1, cysk_plas 1	(predict for NP_001326475.1)
nucl 4, chlo 3, cyto_nucl 3, cyto 2	(predict for NP_001326476.1)
chlo 4, nucl 3, cyto 2, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for NP_001326477.1)
nucl 4, cyto 3, chlo 2, cysk 1, chlo_mito 1, cysk_plas 1	(predict for NP_001326478.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for NP_001326479.1)
cyto 4, chlo 2, nucl 2, cyto_pero 2, cyto_E.R. 2	(predict for NP_001326480.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for NP_566334.1)
chlo 3, nucl 3, cyto 3, cyto_nucl 3	(predict for NP_974258.1)
chlo 4, nucl 3, cyto 2, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1	(predict for NP_974259.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for NP_001319501.1)
other 6, chlo 3	(predict for NP_001319502.1)
other 6, chlo 3	(predict for NP_001326473.1)
other 6, chlo 3	(predict for NP_001326474.1)
other 6, chlo 3	(predict for NP_001326475.1)
other 6, chlo 3	(predict for NP_001326476.1)
other 6, chlo 3	(predict for NP_001326477.1)
other 6, chlo 3	(predict for NP_001326478.1)
other 6, chlo 3	(predict for NP_001326479.1)
other 6, chlo 3	(predict for NP_001326480.1)
other 6, chlo 3	(predict for NP_566334.1)
other 6, chlo 3	(predict for NP_974258.1)
other 6, chlo 3	(predict for NP_974259.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G08840 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
7.2	AT2G40860	protein kinase family protein / protein phosphatase 2C (PP2C) family protein	[detail]	818684
6.4	HUB1	histone mono-ubiquitination 1	[detail]	819104
6.3	KEA2	K+ efflux antiporter 2	[detail]	825834
5.4	AT1G77230	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	844059
4.2	AT4G25770	alpha/beta-Hydrolases superfamily protein	[detail]	828682

Coexpressed
gene list

[Coexpressed gene list for AT3G08840]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258990_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258990_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258990_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820031
Refseq ID (protein)	NP_001319501.1
	NP_001319502.1
	NP_001326473.1
	NP_001326474.1
	NP_001326475.1
	NP_001326476.1
	NP_001326477.1
	NP_001326478.1
	NP_001326479.1
	NP_001326480.1
	NP_566334.1
	NP_974258.1
	NP_974259.1

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