[←][→] ath   AT3G08860 Gene
functional annotation
Function   PYRIMIDINE 4  
GO BP
GO:0043562 [list] [network] cellular response to nitrogen levels  (44 genes)  IEP  
GO:0009853 [list] [network] photorespiration  (54 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0008453 [list] [network] alanine-glyoxylate transaminase activity  (6 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (84 genes)  IEA  
KEGG ath00250 [list] [network] Alanine, aspartate and glutamate metabolism (51 genes)
ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00270 [list] [network] Cysteine and methionine metabolism (121 genes)
ath00280 [list] [network] Valine, leucine and isoleucine degradation (51 genes)
Protein NP_001326563.1  NP_187498.1 
BLAST NP_001326563.1  NP_187498.1 
Orthologous [Ortholog page] AGT3 (ath)  LOC4332775 (osa)  LOC4339095 (osa)  LOC7460426 (ppo)  LOC11433125 (mtr)  LOC25490994 (mtr)  LOC100170733 (gma)  LOC100170738 (gma)  LOC100251671 (vvi)  LOC100258727 (vvi)  LOC100274974 (zma)  LOC100279249 (zma)  LOC100384690 (zma)  LOC100797583 (gma)  LOC101268729 (sly)  LOC103857781 (bra)  LOC103859327 (bra)  LOC103865668 (bra)  LOC103867109 (bra) 
Subcellular
localization
wolf
mito 6,  chlo_mito 5,  chlo 3  (predict for NP_001326563.1)
mito 6,  chlo_mito 5,  chlo 3  (predict for NP_187498.1)
Subcellular
localization
TargetP
mito 9  (predict for NP_001326563.1)
mito 9  (predict for NP_187498.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00270 Cysteine and methionine metabolism 2
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
ath00260 Glycine, serine and threonine metabolism 2
ath00460 Cyanoamino acid metabolism 2
Genes directly connected with PYD4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.9 LSU1 response to low sulfur 1 [detail] 824120
9.8 SULTR4;2 sulfate transporter 4;2 [detail] 820431
8.6 ATSDI1 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 834943
8.3 AT3G05400 Major facilitator superfamily protein [detail] 819704
5.1 NUDT24 nudix hydrolase homolog 24 [detail] 832067
5.1 AT3G13672 TRAF-like superfamily protein [detail] 820573
Coexpressed
gene list		 [Coexpressed gene list for PYD4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258983_at
258983_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258983_at
258983_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258983_at
258983_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820034      
Refseq ID (protein) NP_001326563.1 
NP_187498.1 


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