[←][→] ath   AT3G08940 Gene
functional annotation
Function   light harvesting complex photosystem II  
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (21 genes)  IBA  
GO:0018298 [list] [network] protein-chromophore linkage  (38 genes)  IEA  
GO:0010218 [list] [network] response to far red light  (54 genes)  IEP  
GO:0010114 [list] [network] response to red light  (74 genes)  IEP  
GO:0009637 [list] [network] response to blue light  (98 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (700 genes)  IBA  
GO CC
GO:0009522 [list] [network] photosystem I  (35 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (52 genes)  IEA  
GO:0010287 [list] [network] plastoglobule  (68 genes)  IBA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (373 genes)  IBA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (666 genes)  IBA IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (27 genes)  IEA ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_187506.1  NP_850545.1 
BLAST NP_187506.1  NP_850545.1 
Orthologous [Ortholog page] LOC542478 (zma)  LHCB4.3 (ath)  LHCB4.1 (ath)  LOC4343583 (osa)  LOC7466067 (ppo)  LOC7487313 (ppo)  LOC7488015 (ppo)  LOC11422473 (mtr)  LOC100216729 (zma)  LOC100266604 (vvi)  LOC100785180 (gma)  LOC100785415 (gma)  LOC100794604 (gma)  LOC100820335 (gma)  LOC101249002 (sly)  LOC103850412 (bra)  LOC103866983 (bra)  LOC103870577 (bra) 
Subcellular
localization
wolf
chlo 6,  vacu 1,  nucl 1,  extr 1,  golg 1,  E.R._vacu 1  (predict for NP_187506.1)
chlo 10  (predict for NP_850545.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_187506.1)
chlo 8  (predict for NP_850545.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 12
ath00195 Photosynthesis 5
Genes directly connected with LHCB4.2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
15.0 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
14.4 LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 [detail] 823901
14.4 LHCB6 light harvesting complex photosystem II subunit 6 [detail] 838151
13.5 PSAD-2 photosystem I subunit D-2 [detail] 838400
11.4 LHCB2.3 photosystem II light harvesting complex protein 2.3 [detail] 822391
10.3 AT1G51400 Photosystem II 5 kD protein [detail] 841564
9.3 PETE1 plastocyanin 1 [detail] 843942
6.6 AT3G08920 Rhodanese/Cell cycle control phosphatase superfamily protein [detail] 820041
5.7 VTE5 phytol kinase 1 VTE5 [detail] 830328
Coexpressed
gene list		 [Coexpressed gene list for LHCB4.2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258993_at
258993_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258993_at
258993_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258993_at
258993_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820043      
Refseq ID (protein) NP_187506.1 
NP_850545.1 


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