[←][→] ath   At3g08940 Gene
functional annotation
Function   light harvesting complex photosystem II    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  ISS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_187506.1  NP_850545.1 
BLAST NP_187506.1  NP_850545.1 
Orthologous [Ortholog page] LHCB4.3 (ath)  LHCB4.1 (ath)  LOC4343583 (osa)  LOC7466067 (ppo)  LOC7487313 (ppo)  LOC7488015 (ppo)  LOC11406674 (mtr)  LOC11422473 (mtr)  LOC100785180 (gma)  LOC100785415 (gma)  LOC100794604 (gma)  LOC100820335 (gma)  LOC101249002 (sly)  LOC103850412 (bra)  LOC103866983 (bra)  LOC103870577 (bra)  LOC123044554 (tae)  LOC123052387 (tae)  LOC123188273 (tae)  LOC123425713 (hvu) 
Subcellular
localization
wolf
chlo 6,  vacu 1,  nucl 1,  extr 1,  golg 1,  E.R._vacu 1  (predict for NP_187506.1)
chlo 10  (predict for NP_850545.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_187506.1)
chlo 8  (predict for NP_850545.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 10
ath00195 Photosynthesis 5
Genes directly connected with LHCB4.2 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
17.8 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
17.0 LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 [detail] 823901
16.9 LHCB6 light harvesting complex photosystem II subunit 6 [detail] 838151
15.9 PSAD-2 photosystem I subunit D-2 [detail] 838400
13.4 LHCB2.3 photosystem II light harvesting complex protein 2.3 [detail] 822391
8.1 AT5G39530 hypothetical protein (DUF1997) [detail] 833949
6.2 VTE5 phytol kinase 1 VTE5 [detail] 830328
Coexpressed
gene list		 [Coexpressed gene list for LHCB4.2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258993_at
258993_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258993_at
258993_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258993_at
258993_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820043      
Refseq ID (protein) NP_187506.1 
NP_850545.1 


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