[←][→] ath   At3g09540 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO:0019748 [list] [network] secondary metabolic process  (766 genes)  IEA  
GO:0009414 [list] [network] response to water deprivation  (1006 genes)  IEA  
GO:0009737 [list] [network] response to abscisic acid  (1086 genes)  IEA  
GO:0044248 [list] [network] cellular catabolic process  (1086 genes)  IEA  
GO:1901575 [list] [network] organic substance catabolic process  (1156 genes)  IEA  
GO:0043436 [list] [network] oxoacid metabolic process  (1714 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_001326949.1  NP_001326950.1  NP_187565.1 
BLAST NP_001326949.1  NP_001326950.1  NP_187565.1 
Orthologous [Ortholog page] AT3G55140 (ath)  LOC4326883 (osa)  LOC7467584 (ppo)  LOC7469793 (ppo)  LOC7491952 (ppo)  LOC25484083 (mtr)  LOC25485739 (mtr)  LOC100799009 (gma)  LOC100802068 (gma)  LOC100814368 (gma)  LOC101244802 (sly)  LOC101267397 (sly)  LOC103863187 (bra)  LOC103870538 (bra)  LOC107276207 (osa)  LOC123043487 (tae)  LOC123051348 (tae)  LOC123058756 (tae)  LOC123065891 (tae)  LOC123074951 (tae)  LOC123424575 (hvu)  LOC123442012 (hvu) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  extr 1,  pero 1,  cysk 1  (predict for NP_001326949.1)
pero 4,  cyto 2,  mito 1,  cyto_nucl 1,  chlo 1,  nucl 1,  extr 1,  cysk 1,  cyto_mito 1,  cysk_nucl 1,  mito_plas 1  (predict for NP_001326950.1)
pero 4,  mito 2,  cyto 1,  chlo_mito 1,  chlo 1,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_187565.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for NP_001326949.1)
chlo 4,  other 4  (predict for NP_001326950.1)
chlo 4,  other 4  (predict for NP_187565.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G09540 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.9 NDL2 N-MYC downregulated-like 2 [detail] 831051
6.1 FLA15 FASCICLIN-like arabinogalactan protein 15 precursor [detail] 824402
5.9 AT3G09550 Ankyrin repeat family protein [detail] 820112
4.0 AT5G46600 aluminum activated malate transporter family protein [detail] 834703
Coexpressed
gene list		 [Coexpressed gene list for AT3G09540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258719_at
258719_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258719_at
258719_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258719_at
258719_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820111      
Refseq ID (protein) NP_001326949.1 
NP_001326950.1 
NP_187565.1 


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