ATTED-II : GeneID search result

[←][→] ath AT3G13040 Gene

functional annotation

Function

myb-like HTH transcriptional regulator family protein

GO BP

GO:0006355 [list] [network] regulation of transcription, DNA-templated

(1984 genes)

TAS

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity

(1599 genes)

ISS

KEGG

Protein

NP_001319536.1 NP_566442.1 NP_974298.1

BLAST

NP_001319536.1 NP_566442.1 NP_974298.1

Orthologous

[Ortholog page] LOC4328249 (osa) LOC4341990 (osa) LOC100244458 (vvi) LOC103626417 (zma) LOC103849734 (bra) LOC103859491 (bra) LOC103871004 (bra)

Subcellular
localization
wolf

nucl 6, chlo 1, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1	(predict for NP_001319536.1)
nucl 6, chlo 1, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1	(predict for NP_566442.1)
nucl 6, chlo 1, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1	(predict for NP_974298.1)

Subcellular
localization
TargetP

other 4	(predict for NP_001319536.1)
other 4	(predict for NP_566442.1)
other 4	(predict for NP_974298.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

Genes directly connected with AT3G13040 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
8.0	NF-YA4	nuclear factor Y, subunit A4	[detail]	818037
6.2	SPA3	SPA1-related 3	[detail]	820767
6.2	CCA1	circadian clock associated 1	[detail]	819296

Coexpressed
gene list

[Coexpressed gene list for AT3G13040]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

257855_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

257855_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

257855_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820490
Refseq ID (protein)	NP_001319536.1
	NP_566442.1
	NP_974298.1

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