[←][→] ath   At3g13570 Gene
functional annotation
Function   SC35-like splicing factor 30A    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (105 genes)  IGI TAS  
GO:0008380 [list] [network] RNA splicing  (191 genes)  NAS  
GO CC
GO:0016607 [list] [network] nuclear speck  (50 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_187966.1 
BLAST NP_187966.1 
Orthologous [Ortholog page] SCL30 (ath)  SCL33 (ath)  LOC4328900 (osa)  LOC4344009 (osa)  LOC7457708 (ppo)  LOC7458142 (ppo)  LOC7467550 (ppo)  LOC9268085 (osa)  LOC11432730 (mtr)  LOC11433183 (mtr)  LOC18097234 (ppo)  LOC18100597 (ppo)  LOC18106174 (ppo)  LOC25483590 (mtr)  LOC100775883 (gma)  LOC100779321 (gma)  LOC100792397 (gma)  LOC100804294 (gma)  LOC100816913 (gma)  LOC101259473 (sly)  LOC103829790 (bra)  LOC103849767 (bra)  LOC103863157 (bra)  LOC103870289 (bra)  LOC103871046 (bra)  LOC107275752 (osa)  LOC123044095 (tae)  LOC123051967 (tae)  LOC123087284 (tae)  LOC123090669 (tae)  LOC123095684 (tae)  LOC123102480 (tae)  LOC123110686 (tae)  LOC123119693 (tae)  LOC123187846 (tae)  LOC123400214 (hvu)  LOC123405243 (hvu)  LOC123409579 (hvu)  LOC123425165 (hvu)  LOC123428235 (hvu)  LOC123447127 (hvu)  LOC123450618 (hvu) 
Subcellular
localization
wolf
nucl 9  (predict for NP_187966.1)
Subcellular
localization
TargetP
chlo 7,  mito 4  (predict for NP_187966.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03015 mRNA surveillance pathway 2
Genes directly connected with SCL30A on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.9 SC35 serine/arginine-rich splicing factor-like protein, putative [detail] 836541
8.5 RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [detail] 824518
7.7 AT4G39680 SAP domain-containing protein [detail] 830123
5.6 UBP1B oligouridylate binding protein 1B [detail] 838309
Coexpressed
gene list		 [Coexpressed gene list for SCL30A]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256649_at
256649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256649_at
256649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256649_at
256649_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820559      
Refseq ID (protein) NP_187966.1 


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