[][] ath   AT3G13970 Gene
functional annotation
Function   Ubiquitin-like superfamily protein
GO BP
GO:0006501 [list] [network] C-terminal protein lipidation  (3 genes)  IBA  
GO:0000422 [list] [network] autophagy of mitochondrion  (12 genes)  IBA  
GO:0000045 [list] [network] autophagosome assembly  (19 genes)  IBA  
GO:0006914 [list] [network] autophagy  (55 genes)  IGI  
GO:0015031 [list] [network] protein transport  (724 genes)  IEA  
GO CC
GO:0034274 [list] [network] Atg12-Atg5-Atg16 complex  (2 genes)  IBA  
GO:0034045 [list] [network] phagophore assembly site membrane  (9 genes)  IBA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0019776 [list] [network] Atg8 ligase activity  (4 genes)  IBA  
KEGG ath04136 [list] [network] Autophagy - other (40 genes)
Protein NP_001326255.1  NP_001326256.1  NP_001326257.1  NP_188013.2 
BLAST NP_001326255.1  NP_001326256.1  NP_001326257.1  NP_188013.2 
Orthologous [Ortholog page] ATG12A (ath)LOC4340429 (osa)LOC11423981 (mtr)LOC100240693 (zma)LOC100249752 (vvi)LOC100527733 (gma)LOC100527905 (gma)LOC101259616 (sly)LOC103870078 (bra)LOC103871063 (bra)
Subcellular
localization
wolf
cyto 6,  chlo 2,  nucl 1  (predict for NP_001326255.1)
nucl 3,  chlo 2,  mito 2,  chlo_mito 2,  plas 1,  cyto_mito 1,  golg_plas 1  (predict for NP_001326256.1)
nucl 3,  chlo 2,  mito 2,  chlo_mito 2,  plas 1,  cyto_mito 1,  golg_plas 1  (predict for NP_001326257.1)
cyto 7,  chlo 2  (predict for NP_188013.2)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for NP_001326255.1)
other 6  (predict for NP_001326256.1)
other 6  (predict for NP_001326257.1)
other 4,  chlo 3  (predict for NP_188013.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00510 N-Glycan biosynthesis 2
ath03018 RNA degradation 2
ath03040 Spliceosome 2
Genes directly connected with APG12B on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.7 AT5G03345 membrane magnesium transporter-like protein [detail] 831867
5.5 AT5G24980 transmembrane protein [detail] 832568
5.5 EMB2816 Small nuclear ribonucleoprotein family protein [detail] 814913
5.1 AT3G15420 Transcription factor TFIIIC, tau55-related protein [detail] 820781
4.9 AT1G30845 cell growth defect protein [detail] 839968
Coexpressed
gene list
[Coexpressed gene list for APG12B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258205_at
258205_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258205_at
258205_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
258205_at
258205_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 820611    
Refseq ID (protein) NP_001326255.1 
NP_001326256.1 
NP_001326257.1 
NP_188013.2 


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