ATTED-II : GeneID search result

[←][→] ath AT3G15030 Gene

functional annotation

Function

TCP family transcription factor 4

GO BP

GO:0045962 [list] [network] positive regulation of development, heterochronic	(8 genes)	IBA IGI
GO:2000032 [list] [network] regulation of secondary shoot formation	(11 genes)	IBA
GO:0048826 [list] [network] cotyledon morphogenesis	(24 genes)	IGI
GO:0048825 [list] [network] cotyledon development	(54 genes)	IMP
GO:0009965 [list] [network] leaf morphogenesis	(96 genes)	IBA IGI
GO:0010150 [list] [network] leaf senescence	(111 genes)	IGI
GO:0048831 [list] [network] regulation of shoot system development	(240 genes)	IBA
GO:0048366 [list] [network] leaf development	(338 genes)	IGI TAS
GO:0009793 [list] [network] embryo development ending in seed dormancy	(547 genes)	IMP
GO:0030154 [list] [network] cell differentiation	(695 genes)	IBA IGI
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IBA ISM

GO MF

GO:0001216 [list] [network] DNA-binding transcription activator activity	(40 genes)	IMP
GO:1990837 [list] [network] sequence-specific double-stranded DNA binding	(255 genes)	IDA
GO:0043565 [list] [network] sequence-specific DNA binding	(796 genes)	IBA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	IBA ISS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IDA
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001189896.1 NP_001319557.1 NP_188121.1 NP_850589.1

BLAST

NP_001189896.1 NP_001319557.1 NP_188121.1 NP_850589.1

Orthologous

[Ortholog page] lanceolate (sly) TCP3 (ath) LOC4325137 (osa) LOC4325252 (osa) LOC7467463 (ppo) LOC7471894 (ppo) LOC11414122 (mtr) LOC25487262 (mtr) LOC25487743 (mtr) LOC25502512 (mtr) TCP3 (sly) LOC100243659 (vvi) LOC100248756 (vvi) TCP10 (sly) LOC100782826 (gma) LOC100796390 (gma) LOC100796938 (gma) LOC100800275 (gma) LOC100802063 (gma) LOC100810078 (gma) LOC100811837 (gma) LOC100814907 (gma) LOC103634970 (zma) LOC103832684 (bra) LOC103841727 (bra) LOC103859604 (bra) LOC103869962 (bra) LOC109945186 (zma)

Subcellular
localization
wolf

nucl 10	(predict for NP_001189896.1)
nucl 10	(predict for NP_001319557.1)
nucl 10	(predict for NP_188121.1)
nucl 10	(predict for NP_850589.1)

Subcellular
localization
TargetP

other 6, chlo 5	(predict for NP_001189896.1)
other 6, chlo 5	(predict for NP_001319557.1)
other 6, chlo 5	(predict for NP_188121.1)
other 6, chlo 5	(predict for NP_850589.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with TCP4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
7.0	TCP2	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	[detail]	827568
6.6	TCP24	TEOSINTE BRANCHED 1, cycloidea, and PCF family 24	[detail]	839901
5.9	iqd21	IQ-domain 21	[detail]	824087
5.5	NGA1	AP2/B3-like transcriptional factor family protein	[detail]	819300
5.1	HB23	homeobox protein 23	[detail]	833972

Coexpressed
gene list

[Coexpressed gene list for TCP4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

257267_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

257267_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

257267_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820732
Refseq ID (protein)	NP_001189896.1
	NP_001319557.1
	NP_188121.1
	NP_850589.1

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