[←][→] ath   At3g15460 Gene
functional annotation
Function   Ribosomal RNA processing Brix domain protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000027 [list] [network] ribosomal large subunit assembly  (4 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (169 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0019843 [list] [network] rRNA binding  (21 genes)  IEA  
KEGG
Protein NP_566514.1 
BLAST NP_566514.1 
Orthologous [Ortholog page] AT1G52930 (ath)  LOC4329832 (osa)  LOC7460836 (ppo)  LOC11406501 (mtr)  LOC18095612 (ppo)  LOC25481942 (mtr)  LOC100796135 (gma)  LOC100797218 (gma)  LOC100797887 (gma)  LOC101259142 (sly)  LOC103840749 (bra)  LOC103859624 (bra)  LOC103869918 (bra)  LOC123046671 (tae)  LOC123054535 (tae)  LOC123127546 (tae)  LOC123137159 (tae)  LOC123144664 (tae)  LOC123190387 (tae)  LOC123402981 (hvu)  LOC123427864 (hvu) 
Subcellular
localization
wolf
nucl 6,  chlo 1,  cyto 1,  mito 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1,  mito_plas 1,  cyto_plas 1  (predict for NP_566514.1)
Subcellular
localization
TargetP
other 6  (predict for NP_566514.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
Genes directly connected with AT3G15460 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.7 HDT4 histone deacetylase-related / HD-like protein [detail] 817331
9.0 AT4G04940 transducin family protein / WD-40 repeat family protein [detail] 825833
8.4 WDR55 transducin family protein / WD-40 repeat family protein [detail] 817987
Coexpressed
gene list		 [Coexpressed gene list for AT3G15460]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258396_at
258396_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258396_at
258396_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258396_at
258396_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820785      
Refseq ID (protein) NP_566514.1 


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