[←][→] ath   At3g16950 Gene
functional annotation
Function   lipoamide dehydrogenase 1    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0006086 [list] [network] acetyl-CoA biosynthetic process from pyruvate  (4 genes)  TAS  
GO:0046685 [list] [network] response to arsenic-containing substance  (18 genes)  IMP  
GO:0045454 [list] [network] cell redox homeostasis  (27 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA RCA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO MF
GO:0004148 [list] [network] dihydrolipoyl dehydrogenase activity  (3 genes)  ISS  
KEGG ath00010 [list] [network] Glycolysis / Gluconeogenesis (119 genes)
ath00020 [list] [network] Citrate cycle (TCA cycle) (64 genes)
ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00280 [list] [network] Valine, leucine and isoleucine degradation (52 genes)
ath00310 [list] [network] Lysine degradation (31 genes)
ath00380 [list] [network] Tryptophan metabolism (64 genes)
ath00620 [list] [network] Pyruvate metabolism (97 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00640 [list] [network] Propanoate metabolism (41 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_001078165.1  NP_566562.1 
BLAST NP_001078165.1  NP_566562.1 
Orthologous [Ortholog page] AT4G16155 (ath)  LOC4326849 (osa)  LOC4337862 (osa)  LOC7485915 (ppo)  LOC7489415 (ppo)  LOC11408806 (mtr)  LOC11422305 (mtr)  LOC100782004 (gma)  LOC100803176 (gma)  LOC100809578 (gma)  LOC101245293 (sly)  LOC101246429 (sly)  LOC103859689 (bra)  LOC103870046 (bra)  LOC123038214 (tae)  LOC123113336 (tae)  LOC123180580 (tae)  LOC123426077 (hvu) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001078165.1)
chlo 10  (predict for NP_566562.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001078165.1)
chlo 9  (predict for NP_566562.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00620 Pyruvate metabolism 8
ath01200 Carbon metabolism 8
ath00010 Glycolysis / Gluconeogenesis 6
ath01240 Biosynthesis of cofactors 5
ath00061 Fatty acid biosynthesis 5
Genes directly connected with LPD1 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
16.3 PKP-BETA1 plastidic pyruvate kinase beta subunit 1 [detail] 835369
13.8 PDH-E1 ALPHA pyruvate dehydrogenase E1 alpha [detail] 839429
13.8 MOD1 NAD(P)-binding Rossmann-fold superfamily protein [detail] 815152
13.0 ACP1 acyl carrier protein 1 [detail] 819664
12.8 AT3G56130 biotin/lipoyl attachment domain-containing protein [detail] 824779
11.6 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit [detail] 818382
11.1 RUS6 root UVB sensitive protein (Protein of unknown function, DUF647) [detail] 835045
10.5 EMB3141 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 835107
10.4 AT5G08415 Radical SAM superfamily protein [detail] 830740
8.1 BCA5 beta carbonic anhydrase 5 [detail] 829498
8.0 AT3G02630 Plant stearoyl-acyl-carrier-protein desaturase family protein [detail] 820773
7.1 BIOF biotin F [detail] 830339
6.3 AT1G20480 AMP-dependent synthetase and ligase family protein [detail] 838636
5.2 AT2G17650 AMP-dependent synthetase and ligase family protein [detail] 816272
4.4 AT4G09160 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [detail] 826497
Coexpressed
gene list		 [Coexpressed gene list for LPD1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257895_at
257895_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257895_at
257895_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257895_at
257895_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820951      
Refseq ID (protein) NP_001078165.1 
NP_566562.1 


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