[←][→] ath   At3g17040 Gene
functional annotation
Function   high chlorophyll fluorescent 107    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1901918 [list] [network] negative regulation of exoribonuclease activity  (1 genes)  IDA  
GO:0006417 [list] [network] regulation of translation  (50 genes)  IMP  
GO:0010114 [list] [network] response to red light  (101 genes)  IEP  
GO:0006397 [list] [network] mRNA processing  (183 genes)  IEA IMP  
GO:0009657 [list] [network] plastid organization  (280 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (567 genes)  IMP  
GO CC
GO:0031969 [list] [network] chloroplast membrane  (118 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (55 genes)  IDA  
GO:0043621 [list] [network] protein self-association  (109 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA IEA  
KEGG
Protein NP_001189914.1  NP_001327903.1  NP_001327904.1  NP_188329.1 
BLAST NP_001189914.1  NP_001327903.1  NP_001327904.1  NP_188329.1 
Orthologous [Ortholog page] LOC4332620 (osa)  LOC7485822 (ppo)  LOC11427918 (mtr)  LOC100801939 (gma)  LOC100819232 (gma)  LOC101251873 (sly)  LOC103869721 (bra)  LOC123085677 (tae)  LOC123092335 (tae)  LOC123097667 (tae)  LOC123448814 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 2,  nucl_plas 2,  cyto 1,  plas 1,  cyto_E.R. 1  (predict for NP_001189914.1)
chlo 4,  nucl_plas 2,  nucl 1,  cyto 1,  plas 1,  extr 1  (predict for NP_001327903.1)
chlo 4,  nucl 2,  cyto 1,  extr 1  (predict for NP_001327904.1)
chlo 4,  nucl 2,  chlo_mito 2,  cyto 1,  nucl_plas 1  (predict for NP_188329.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001189914.1)
chlo 9  (predict for NP_001327903.1)
chlo 9  (predict for NP_001327904.1)
chlo 9  (predict for NP_188329.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 7
ath00900 Terpenoid backbone biosynthesis 2
Genes directly connected with HCF107 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.2 AT2G35260 CAAX protease self-immunity protein [detail] 818093
10.5 AT1G74470 Pyridine nucleotide-disulfide oxidoreductase family protein [detail] 843788
10.1 CH1 Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein [detail] 841029
8.9 AT5G13770 Pentatricopeptide repeat (PPR-like) superfamily protein [detail] 831222
8.6 CLA1 Deoxyxylulose-5-phosphate synthase [detail] 827230
8.4 SIGA sigma factor A [detail] 842794
7.2 UGT88A1 UDP-glucosyl transferase 88A1 [detail] 820900
5.7 AT1G19715 Mannose-binding lectin superfamily protein [detail] 838560
5.6 COL4 zinc finger CONSTANS-like protein [detail] 832563
5.2 AT4G37550 Acetamidase/Formamidase family protein [detail] 829910
Coexpressed
gene list		 [Coexpressed gene list for HCF107]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257932_at
257932_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257932_at
257932_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257932_at
257932_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820961      
Refseq ID (protein) NP_001189914.1 
NP_001327903.1 
NP_001327904.1 
NP_188329.1 


The preparation time of this page was 0.1 [sec].