ATTED-II : GeneID search result

[←][→] ath AT3G19990 Gene

functional annotation

Function

E3 ubiquitin-protein ligase

GO BP

GO CC

GO:0009570 [list] [network] chloroplast stroma	(750 genes)	IDA
GO:0005829 [list] [network] cytosol	(3506 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	IDA ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0016874 [list] [network] ligase activity

(232 genes)

IEA

KEGG

Protein

NP_001319597.1 NP_188633.2

BLAST

NP_001319597.1 NP_188633.2

Orthologous

[Ortholog page] LOC7465588 (ppo) LOC25480955 (mtr) LOC100193035 (zma) LOC100247588 (vvi) LOC100252690 (vvi) LOC100257837 (vvi) LOC100806152 (gma) LOC101256540 (sly) LOC103836777 (bra) LOC103869376 (bra) LOC107276217 (osa)

Subcellular
localization
wolf

cyto 6, cyto_nucl 4, nucl 1	(predict for NP_001319597.1)
cyto 3, nucl 2, mito 2, cyto_plas 2	(predict for NP_188633.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001319597.1)
chlo 6	(predict for NP_188633.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G19990 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.6	AT1G24560	paramyosin	[detail]	839070
5.5	VSR1	vacuolar sorting receptor homolog 1	[detail]	824451
5.3	AT5G12890	UDP-Glycosyltransferase superfamily protein	[detail]	831129
4.7	AT4G17940	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	827519

Coexpressed
gene list

[Coexpressed gene list for AT3G19990]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

256624_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

256624_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

256624_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	821537
Refseq ID (protein)	NP_001319597.1
Refseq ID (protein)	NP_188633.2

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