[][] ath   At3g20250 Gene
functional annotation
Function   pumilio 5 Plant GARDENPlant GARDEN JBrowse
GO BP
GO:0061158 [list] [network] 3'-UTR-mediated mRNA destabilization  (1 genes)  IMP  
GO:0009819 [list] [network] drought recovery  (12 genes)  IMP  
GO:0051607 [list] [network] defense response to virus  (53 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (607 genes)  IMP  
GO:0006970 [list] [network] response to osmotic stress  (883 genes)  IMP  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (55 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
KEGG
Protein NP_001319600.1  NP_001327304.1  NP_001327305.1 
BLAST NP_001319600.1  NP_001327304.1  NP_001327305.1 
Orthologous [Ortholog page] PUM6 (ath)LOC4346059 (osa)LOC4347460 (osa)LOC7490841 (ppo)LOC11445389 (mtr)LOC18100470 (ppo)LOC18111187 (ppo)LOC100780168 (gma)LOC100811036 (gma)LOC100819166 (gma)LOC101263093 (sly)LOC103859846 (bra)LOC103861595 (bra)LOC103863640 (bra)LOC103869342 (bra)LOC123104231 (tae)LOC123112488 (tae)LOC123121994 (tae)LOC123151455 (tae)LOC123157024 (tae)LOC123170346 (tae)LOC123399562 (hvu)LOC123413488 (hvu)
Subcellular
localization
wolf
nucl 7,  chlo 1,  vacu 1,  pero 1,  cysk 1  (predict for NP_001319600.1)
nucl 7,  chlo 1,  vacu 1,  pero 1,  cysk 1  (predict for NP_001327304.1)
nucl 7,  chlo 1,  vacu 1,  pero 1,  cysk 1  (predict for NP_001327305.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001319600.1)
other 7  (predict for NP_001327304.1)
other 7  (predict for NP_001327305.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with PUM5 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.7 ML2 MEI2-like 2 [detail] 818890
7.4 VSR7 VACUOLAR SORTING RECEPTOR 7 [detail] 827757
7.0 AT1G22930 T-complex protein 11 [detail] 838900
6.0 AT2G22660 DNA-binding protein, putative (duplicated DUF1399) [detail] 816797
5.5 CALS1 callose synthase 1 [detail] 837059
5.0 AO1 aldehyde oxidase 1 [detail] 832221
Coexpressed
gene list
[Coexpressed gene list for PUM5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257122_at
257122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257122_at
257122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
257122_at
257122_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 821569    
Refseq ID (protein) NP_001319600.1 
NP_001327304.1 
NP_001327305.1 


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