[][] ath   AT3G20250 Gene
functional annotation
Function   pumilio 5
GO BP
GO:0061158 [list] [network] 3'-UTR-mediated mRNA destabilization  (1 genes)  IMP  
GO:0009819 [list] [network] drought recovery  (12 genes)  IMP  
GO:0051607 [list] [network] defense response to virus  (44 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (485 genes)  IMP  
GO:0006970 [list] [network] response to osmotic stress  (563 genes)  IMP  
GO CC
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO MF
GO:0003727 [list] [network] single-stranded RNA binding  (64 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
KEGG
Protein NP_001319600.1  NP_001327304.1  NP_001327305.1 
BLAST NP_001319600.1  NP_001327304.1  NP_001327305.1 
Orthologous [Ortholog page] PUM6 (ath)LOC4346059 (osa)LOC4347460 (osa)LOC7490841 (ppo)LOC11445389 (mtr)LOC100254662 (vvi)LOC100780168 (gma)LOC100811036 (gma)LOC100819166 (gma)LOC101263093 (sly)LOC103653177 (zma)LOC103859846 (bra)LOC103861595 (bra)LOC103863640 (bra)LOC103869342 (bra)
Subcellular
localization
wolf
nucl 7,  chlo 1,  vacu 1,  pero 1,  cysk 1  (predict for NP_001319600.1)
nucl 7,  chlo 1,  vacu 1,  pero 1,  cysk 1  (predict for NP_001327304.1)
nucl 7,  chlo 1,  vacu 1,  pero 1,  cysk 1  (predict for NP_001327305.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001319600.1)
other 7  (predict for NP_001327304.1)
other 7  (predict for NP_001327305.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with PUM5 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
6.8 ML2 MEI2-like 2 [detail] 818890
6.5 AT1G22930 T-complex protein 11 [detail] 838900
6.3 VSR7 VACUOLAR SORTING RECEPTOR 7 [detail] 827757
6.0 AT2G22660 DNA-binding protein, putative (duplicated DUF1399) [detail] 816797
5.7 RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) [detail] 834509
5.2 CALS1 callose synthase 1 [detail] 837059
4.6 AT2G31990 Exostosin family protein [detail] 817758
Coexpressed
gene list
[Coexpressed gene list for PUM5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257122_at
257122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257122_at
257122_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
257122_at
257122_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 821569    
Refseq ID (protein) NP_001319600.1 
NP_001327304.1 
NP_001327305.1 


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