| functional annotation |
| Function |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Plant GARDEN Plant GARDEN JBrowse
|
| GO BP |
|
GO:0036124 [list] [network] histone H3-K9 trimethylation
|
(1 genes)
|
IMP
|
 |
|
GO:0070544 [list] [network] histone H3-K36 demethylation
|
(1 genes)
|
IDA
|
|
|
GO:0071557 [list] [network] histone H3-K27 demethylation
|
(3 genes)
|
IDA
IMP
|
|
|
GO:0010378 [list] [network] temperature compensation of the circadian clock
|
(4 genes)
|
IMP
|
|
|
GO:0033169 [list] [network] histone H3-K9 demethylation
|
(8 genes)
|
IMP
|
|
|
GO:1900457 [list] [network] regulation of brassinosteroid mediated signaling pathway
|
(22 genes)
|
IMP
|
|
|
GO:1990110 [list] [network] callus formation
|
(29 genes)
|
IMP
|
|
|
GO:0080022 [list] [network] primary root development
|
(36 genes)
|
IMP
|
|
|
GO:0042752 [list] [network] regulation of circadian rhythm
|
(61 genes)
|
IMP
|
|
|
GO:0045814 [list] [network] negative regulation of gene expression, epigenetic
|
(78 genes)
|
IDA
|
|
|
GO:2000028 [list] [network] regulation of photoperiodism, flowering
|
(94 genes)
|
IMP
|
|
|
GO:1900140 [list] [network] regulation of seedling development
|
(98 genes)
|
IMP
|
|
|
GO:0009741 [list] [network] response to brassinosteroid
|
(99 genes)
|
IEP
|
|
|
GO:0007623 [list] [network] circadian rhythm
|
(123 genes)
|
IMP
|
|
|
GO:0009787 [list] [network] regulation of abscisic acid-activated signaling pathway
|
(134 genes)
|
IMP
|
|
|
GO:0040029 [list] [network] epigenetic regulation of gene expression
|
(146 genes)
|
IDA
IMP
|
|
|
GO:0009266 [list] [network] response to temperature stimulus
|
(843 genes)
|
IDA
IMP
|
|
|
GO:0009737 [list] [network] response to abscisic acid
|
(1086 genes)
|
IEP
IMP
|
|
|
GO:0010468 [list] [network] regulation of gene expression
|
(2177 genes)
|
IMP
|
|
|
| GO CC |
|
| GO MF |
|
GO:0140684 [list] [network] histone H3K9me2/H3K9me3 demethylase activity
|
(1 genes)
|
IMP
|
|
|
GO:0061628 [list] [network] H3K27me3 modified histone binding
|
(2 genes)
|
IDA
|
|
|
GO:0046975 [list] [network] histone H3K36 methyltransferase activity
|
(3 genes)
|
IDA
|
|
|
GO:0071558 [list] [network] histone H3K27me2/H3K27me3 demethylase activity
|
(5 genes)
|
IDA
IMP
|
|
|
GO:0043565 [list] [network] sequence-specific DNA binding
|
(890 genes)
|
IDA
|
|
|
GO:0003700 [list] [network] DNA-binding transcription factor activity
|
(1576 genes)
|
IPI
|
|
|
GO:0005515 [list] [network] protein binding
|
(5066 genes)
|
IPI
|
|
|
| KEGG |
|
|
| Protein |
NP_001030733.1
NP_001327066.1
NP_001327067.1
NP_566667.1
NP_850617.1
|
| BLAST |
NP_001030733.1
NP_001327066.1
NP_001327067.1
NP_566667.1
NP_850617.1
|
| Orthologous |
[Ortholog page]
LOC4347435 (osa)
LOC7496047 (ppo)
LOC9269734 (osa)
LOC25492610 (mtr)
LOC100779376 (gma)
LOC100813075 (gma)
JMJ524 (sly)
JMJ30 (bra)
LOC123104170 (tae)
LOC123112409 (tae)
LOC123120670 (tae)
LOC123151191 (tae)
LOC123157476 (tae)
LOC123165350 (tae)
LOC123399390 (hvu)
LOC123411037 (hvu)
|
Subcellular
localization
wolf |
|
cyto 5,
nucl 3,
cyto_pero 3
|
(predict for NP_001030733.1)
|
|
cyto 4,
nucl 4,
nucl_plas 3,
plas 1
|
(predict for NP_001327066.1)
|
|
cyto 6,
nucl 3,
cyto_pero 3,
cyto_E.R. 3,
cyto_plas 3
|
(predict for NP_001327067.1)
|
|
nucl 4,
cyto 4,
chlo 1,
mito 1,
extr 1,
chlo_mito 1
|
(predict for NP_566667.1)
|
|
nucl 5,
cyto 4,
chlo 1,
mito 1,
chlo_mito 1
|
(predict for NP_850617.1)
|
|
Subcellular
localization
TargetP |
|
other 7
|
(predict for NP_001030733.1)
|
|
other 7
|
(predict for NP_001327066.1)
|
|
other 7
|
(predict for NP_001327067.1)
|
|
other 7
|
(predict for NP_566667.1)
|
|
other 7
|
(predict for NP_850617.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath04712 |
Circadian rhythm - plant |
5 |
 |
Genes directly connected with JMJD5 on the network
| coex z* |
Locus |
Function* |
CoexViewer |
Entrez Gene ID* |
| 12.1 |
COR27 |
cold regulated protein 27 |
[detail] |
834301 |
| 10.6 |
COL9 |
CONSTANS-like 9 |
[detail] |
819956 |
| 9.0 |
HCAR |
coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family |
[detail] |
839472 |
| 7.9 |
BOA |
Homeodomain-like superfamily protein |
[detail] |
836076 |
| 6.1 |
AT2G40085 |
uncharacterized protein |
[detail] |
2745588 |
|
Coexpressed
gene list |
[Coexpressed gene list for JMJD5]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
257985_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
257985_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
257985_at
X axis is samples (xls file), and Y axis is log-expression.
|
At3g20810 Gene
