[←][→] ath   AT3G23620 Gene
functional annotation
Function   Ribosomal RNA processing Brix domain protein  
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (13 genes)  IBA  
GO:0000027 [list] [network] ribosomal large subunit assembly  (33 genes)  IBA  
GO:0032774 [list] [network] RNA biosynthetic process  (192 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IBA IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0019843 [list] [network] rRNA binding  (99 genes)  IBA IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_566734.1 
BLAST NP_566734.1 
Orthologous [Ortholog page] LOC4323989 (osa)  LOC7463084 (ppo)  LOC25483892 (mtr)  LOC100252891 (vvi)  LOC100282857 (zma)  LOC100381340 (zma)  LOC100781114 (gma)  LOC100814010 (gma)  LOC101263361 (sly)  LOC103828722 (bra)  LOC103832323 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1  (predict for NP_566734.1)
Subcellular
localization
TargetP
other 6  (predict for NP_566734.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03010 Ribosome 2
Genes directly connected with AT3G23620 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.8 AT5G60990 DEA(D/H)-box RNA helicase family protein [detail] 836220
13.6 MEE49 Ribosomal RNA processing Brix domain protein [detail] 828136
12.1 AT1G31660 bystin-like protein [detail] 840053
10.9 IMP4 Ribosomal RNA processing Brix domain protein [detail] 842682
10.9 AT5G48240 Rrp15p protein [detail] 834877
8.5 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylase [detail] 829307
7.0 AT1G22950 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [detail] 838902
6.5 AT1G54770 Fcf2 pre-rRNA processing protein [detail] 841918
Coexpressed
gene list		 [Coexpressed gene list for AT3G23620]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258104_at
258104_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258104_at
258104_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258104_at
258104_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821942      
Refseq ID (protein) NP_566734.1 


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