[←][→] ath   At3g23620 Gene
functional annotation
Function   Ribosomal RNA processing Brix domain protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0032774 [list] [network] RNA biosynthetic process  (162 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0019843 [list] [network] rRNA binding  (21 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_566734.1 
BLAST NP_566734.1 
Orthologous [Ortholog page] LOC4323989 (osa)  LOC7463084 (ppo)  LOC25483892 (mtr)  LOC100781114 (gma)  LOC100814010 (gma)  LOC101263361 (sly)  LOC103828722 (bra)  LOC103832323 (bra)  LOC123103742 (tae)  LOC123105272 (tae)  LOC123111959 (tae)  LOC123117083 (tae)  LOC123121526 (tae)  LOC123123065 (tae)  LOC123397089 (hvu) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1  (predict for NP_566734.1)
Subcellular
localization
TargetP
other 6  (predict for NP_566734.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath03010 Ribosome 2
Genes directly connected with AT3G23620 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
14.1 MEE49 Ribosomal RNA processing Brix domain protein [detail] 828136
13.3 AT5G60990 DEA(D/H)-box RNA helicase family protein [detail] 836220
13.3 AT1G31660 bystin-like protein [detail] 840053
12.7 AT3G13230 RNA-binding KH domain-containing protein [detail] 820521
12.2 IMP4 Ribosomal RNA processing Brix domain protein [detail] 842682
11.5 AT1G75670 DNA-directed RNA polymerase [detail] 843901
11.5 AT5G22100 RNA cyclase family protein [detail] 832271
11.2 AT2G19385 zinc ion binding protein [detail] 816457
10.9 HDT4 histone deacetylase-related / HD-like protein [detail] 817331
10.7 AT5G48240 Rrp15p protein [detail] 834877
10.0 AT2G44860 Ribosomal protein L24e family protein [detail] 819095
9.7 AT4G31790 Tetrapyrrole (Corrin/Porphyrin) Methylase [detail] 829307
8.6 RID3 Transducin/WD40 repeat-like superfamily protein [detail] 824079
7.2 AT1G54770 Fcf2 pre-rRNA processing protein [detail] 841918
6.5 AT1G22950 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [detail] 838902
Coexpressed
gene list		 [Coexpressed gene list for AT3G23620]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258104_at
258104_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258104_at
258104_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258104_at
258104_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821942      
Refseq ID (protein) NP_566734.1 


The preparation time of this page was 0.5 [sec].