ATTED-II : GeneID search result

[←][→] ath At3g24230 Gene

functional annotation

Function

Pectate lyase family protein

Plant GARDEN Plant GARDEN JBrowse

GO BP

GO:0045490 [list] [network] pectin catabolic process

(78 genes)

IEA

GO CC

GO:0005576 [list] [network] extracellular region

(3154 genes)

ISM

GO MF

GO:0030570 [list] [network] pectate lyase activity	(25 genes)	IEA
GO:0016829 [list] [network] lyase activity	(284 genes)	ISS

KEGG

ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)

Protein

NP_189065.2

BLAST

NP_189065.2

Orthologous

[Ortholog page] 9612 (sly) AT3G07010 (ath) AT3G24670 (ath) AT3G27400 (ath) AT3G53190 (ath) PMR6 (ath) AT4G13210 (ath) AT4G13710 (ath) AT4G24780 (ath) AT5G04310 (ath) AT5G48900 (ath) AT5G63180 (ath) AT1G04680 (ath) AT1G67750 (ath) LOC4335013 (osa) LOC4348800 (osa) LOC7453817 (ppo) LOC7458080 (ppo) LOC7460526 (ppo) LOC7467675 (ppo) LOC7468445 (ppo) LOC7469382 (ppo) LOC7477066 (ppo) LOC7479851 (ppo) LOC7481246 (ppo) LOC7488611 (ppo) LOC7494805 (ppo) LOC11408829 (mtr) LOC11409358 (mtr) LOC11411484 (mtr) LOC11426383 (mtr) LOC18100132 (ppo) LOC25483116 (mtr) LOC25483947 (mtr) LOC25485548 (mtr) LOC25489517 (mtr) LOC25499338 (mtr) LOC100101868 (gma) LOC100775595 (gma) LOC100779940 (gma) LOC100781845 (gma) LOC100782388 (gma) LOC100787082 (gma) LOC100789303 (gma) LOC100790659 (gma) LOC100794814 (gma) LOC100808438 (gma) LOC100809277 (gma) LOC100810380 (gma) LOC100814679 (gma) LOC100815062 (gma) LOC100816256 (gma) LOC101244298 (sly) LOC101252082 (sly) PL (sly) LOC101254639 (sly) LOC101257697 (sly) LOC101260911 (sly) LOC101263458 (sly) LOC101264881 (sly) LOC101264933 (sly) LOC103828610 (bra) LOC103828688 (bra) LOC103829999 (bra) LOC103831011 (bra) LOC103831201 (bra) LOC103833411 (bra) LOC103834896 (bra) LOC103836561 (bra) LOC103837270 (bra) LOC103837461 (bra) LOC103841243 (bra) LOC103841403 (bra) LOC103843635 (bra) LOC103844229 (bra) LOC103847312 (bra) LOC103850282 (bra) LOC103852424 (bra) LOC103854567 (bra) LOC103855563 (bra) LOC103861505 (bra) LOC103862557 (bra) LOC103863605 (bra) LOC103863641 (bra) LOC103870710 (bra) LOC103873738 (bra) LOC103875221 (bra) LOC112323533 (ppo) LOC123043123 (tae) LOC123044722 (tae) LOC123051018 (tae) LOC123119621 (tae) LOC123180958 (tae) LOC123186967 (tae) LOC123430122 (hvu) LOC123431519 (hvu)

Subcellular
localization
wolf

vacu 4, E.R. 2, extr 1, golg 1, chlo 1, nucl 1, golg_plas 1

(predict for NP_189065.2)

Subcellular
localization
TargetP

scret 9

(predict for NP_189065.2)

Gene coexpression

Network^*for
coexpressed
genes

Coexpressed
gene list

[Coexpressed gene list for AT3G24230]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

257243_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

257243_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

257243_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	822010
Refseq ID (protein)	NP_189065.2

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