[←][→] ath   At3g27400 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO:0009624 [list] [network] response to nematode  (86 genes)  IMP  
GO CC
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_001326295.1  NP_189376.1 
BLAST NP_001326295.1  NP_189376.1 
Orthologous [Ortholog page] 9612 (sly)  AT3G07010 (ath)  AT3G24230 (ath)  AT3G24670 (ath)  AT3G53190 (ath)  PMR6 (ath)  AT4G13210 (ath)  AT4G13710 (ath)  AT4G24780 (ath)  AT5G04310 (ath)  AT5G48900 (ath)  AT5G63180 (ath)  AT1G04680 (ath)  AT1G67750 (ath)  LOC4335013 (osa)  LOC4348800 (osa)  LOC7453817 (ppo)  LOC7458080 (ppo)  LOC7460526 (ppo)  LOC7467675 (ppo)  LOC7468445 (ppo)  LOC7469382 (ppo)  LOC7477066 (ppo)  LOC7479851 (ppo)  LOC7481246 (ppo)  LOC7488611 (ppo)  LOC7494805 (ppo)  LOC11408829 (mtr)  LOC11409358 (mtr)  LOC11411484 (mtr)  LOC11426383 (mtr)  LOC18100132 (ppo)  LOC25483116 (mtr)  LOC25483947 (mtr)  LOC25485548 (mtr)  LOC25489517 (mtr)  LOC25499338 (mtr)  LOC100101868 (gma)  LOC100775595 (gma)  LOC100779940 (gma)  LOC100781845 (gma)  LOC100782388 (gma)  LOC100787082 (gma)  LOC100789303 (gma)  LOC100790659 (gma)  LOC100794814 (gma)  LOC100808438 (gma)  LOC100809277 (gma)  LOC100810380 (gma)  LOC100814679 (gma)  LOC100815062 (gma)  LOC100816256 (gma)  LOC101244298 (sly)  LOC101252082 (sly)  PL (sly)  LOC101254639 (sly)  LOC101257697 (sly)  LOC101260911 (sly)  LOC101263458 (sly)  LOC101264881 (sly)  LOC101264933 (sly)  LOC103828610 (bra)  LOC103828688 (bra)  LOC103829999 (bra)  LOC103831011 (bra)  LOC103831201 (bra)  LOC103833411 (bra)  LOC103834896 (bra)  LOC103836561 (bra)  LOC103837270 (bra)  LOC103837461 (bra)  LOC103841243 (bra)  LOC103841403 (bra)  LOC103843635 (bra)  LOC103844229 (bra)  LOC103847312 (bra)  LOC103850282 (bra)  LOC103852424 (bra)  LOC103854567 (bra)  LOC103855563 (bra)  LOC103861505 (bra)  LOC103862557 (bra)  LOC103863605 (bra)  LOC103863641 (bra)  LOC103870710 (bra)  LOC103873738 (bra)  LOC103875221 (bra)  LOC112323533 (ppo)  LOC123043123 (tae)  LOC123044722 (tae)  LOC123051018 (tae)  LOC123119621 (tae)  LOC123180958 (tae)  LOC123186967 (tae)  LOC123430122 (hvu)  LOC123431519 (hvu) 
Subcellular
localization
wolf
chlo 4,  extr 3,  mito 1,  nucl 1,  E.R. 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001326295.1)
extr 6,  chlo 2,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_189376.1)
Subcellular
localization
TargetP
scret 8,  mito 3  (predict for NP_001326295.1)
scret 9  (predict for NP_189376.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 3
Genes directly connected with AT3G27400 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
13.3 AT1G03820 E6-like protein [detail] 839400
9.3 AT2G01610 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 814690
8.4 GASA5 GAST1 protein homolog 5 [detail] 821194
7.4 AT5G52390 PAR1 protein [detail] 835315
7.0 AT4G39320 microtubule-associated protein-like protein [detail] 830087
6.1 PLP6 PATATIN-like protein 6 [detail] 818507
5.5 AT1G66830 Leucine-rich repeat protein kinase family protein [detail] 843001
4.1 AT3G15720 Pectin lyase-like superfamily protein [detail] 820815
3.7 AT3G61920 UvrABC system protein C [detail] 825365
Coexpressed
gene list		 [Coexpressed gene list for AT3G27400]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257735_at
257735_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257735_at
257735_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257735_at
257735_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 822361      
Refseq ID (protein) NP_001326295.1 
NP_189376.1 


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