[←][→] ath   At3g27640 Gene
functional annotation
Function   Transducin/WD40 repeat-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0048522 [list] [network] positive regulation of cellular process  (856 genes)  IEA  
GO:0048523 [list] [network] negative regulation of cellular process  (960 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG
Protein NP_001326885.1  NP_566822.1 
BLAST NP_001326885.1  NP_566822.1 
Orthologous [Ortholog page] LOC4333813 (osa)  LOC7496841 (ppo)  LOC11421076 (mtr)  LOC100775857 (gma)  LOC100819114 (gma)  LOC101259306 (sly)  LOC103836999 (bra)  LOC103875199 (bra)  LOC123082390 (tae)  LOC123090781 (tae)  LOC123099427 (tae)  LOC123451027 (hvu) 
Subcellular
localization
wolf
chlo 4,  nucl 3,  chlo_mito 3  (predict for NP_001326885.1)
nucl 6,  chlo 1,  cysk 1,  cyto 1,  mito 1,  cysk_plas 1  (predict for NP_566822.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001326885.1)
chlo 4,  mito 3  (predict for NP_566822.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 4
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
Genes directly connected with AT3G27640 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
15.9 RPA70D Replication factor-A protein 1-like protein [detail] 836221
15.5 BARD1 breast cancer associated RING 1 [detail] 839329
15.1 RPA70B RPA70-kDa subunit B [detail] 830696
13.9 AT1G75150 DNA ligase-like protein [detail] 843852
12.4 AT1G20720 RAD3-like DNA-binding helicase protein [detail] 838662
11.9 MCM10 minichromosome maintenance 10 [detail] 816632
11.5 AT4G16807 ATP-dependent caseinolytic protease/crotonase family protein [detail] 6241030
10.6 AT1G27880 DEAD/DEAH box RNA helicase family protein [detail] 839681
10.4 AT1G67180 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [detail] 843038
9.6 HTR12 Histone superfamily protein [detail] 839104
6.4 AT4G13690 RNA-binding protein [detail] 827003
6.1 ICK6 inhibitor/interactor with cyclin-dependent kinase [detail] 834940
Coexpressed
gene list		 [Coexpressed gene list for AT3G27640]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258242_at
258242_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258242_at
258242_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258242_at
258242_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 822386      
Refseq ID (protein) NP_001326885.1 
NP_566822.1 


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