| functional annotation |
| Function |
photosystem II light harvesting complex protein 2.3 |
|
| GO BP |
|
GO:0009769 [list] [network] photosynthesis, light harvesting in photosystem II
|
(6 genes)
|
IDA
|
 |
|
GO:0009645 [list] [network] response to low light intensity stimulus
|
(20 genes)
|
IEP
|
|
|
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I
|
(21 genes)
|
IBA
IDA
|
|
|
GO:0009269 [list] [network] response to desiccation
|
(24 genes)
|
IEP
|
|
|
GO:0018298 [list] [network] protein-chromophore linkage
|
(38 genes)
|
IEA
|
|
|
GO:0010218 [list] [network] response to far red light
|
(54 genes)
|
IDA
IEP
|
|
|
GO:0009644 [list] [network] response to high light intensity
|
(65 genes)
|
IEP
|
|
|
GO:0010114 [list] [network] response to red light
|
(74 genes)
|
IDA
IEP
|
|
|
GO:0009637 [list] [network] response to blue light
|
(98 genes)
|
IEP
|
|
|
GO:0009409 [list] [network] response to cold
|
(411 genes)
|
IEP
|
|
|
GO:0009416 [list] [network] response to light stimulus
|
(700 genes)
|
IBA
IDA
|
|
|
| GO CC |
|
| GO MF |
|
GO:0016168 [list] [network] chlorophyll binding
|
(27 genes)
|
IEA
ISS
|
|
|
GO:0046872 [list] [network] metal ion binding
|
(3180 genes)
|
IEA
|
|
|
| KEGG |
ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes) |
 |
| Protein |
NP_001325794.1
NP_189406.1
|
| BLAST |
NP_001325794.1
NP_189406.1
|
| Orthologous |
[Ortholog page]
CAB4 (sly)
CAB5 (sly)
LHCB2.2 (ath)
LOC4333359 (osa)
LOC7455996 (ppo)
LOC7489858 (ppo)
LOC11434875 (mtr)
LOC100254533 (vvi)
LOC100281879 (zma)
LOC100793702 (gma)
LOC100815789 (gma)
LOC103643653 (zma)
LOC103837002 (bra)
LOC103860327 (bra)
LOC103875194 (bra)
|
Subcellular
localization
wolf |
|
chlo 4,
mito 1,
extr 1,
vacu 1,
nucl 1,
E.R. 1,
golg 1,
cyto_mito 1,
mito_plas 1
|
(predict for NP_001325794.1)
|
|
chlo 6,
nucl 1,
mito 1,
extr 1,
golg 1,
cyto_nucl 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_189406.1)
|
|
Subcellular
localization
TargetP |
|
scret 6
|
(predict for NP_001325794.1)
|
|
chlo 8
|
(predict for NP_189406.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath00196 |
Photosynthesis - antenna proteins |
10 |
 |
| ath00195 |
Photosynthesis |
2 |
 |
| ath00860 |
Porphyrin and chlorophyll metabolism |
2 |
 |
Genes directly connected with LHCB2.3 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 12.2 |
LHCB2.2 |
photosystem II light harvesting complex protein 2.2 |
[detail] |
815055 |
| 11.4 |
LHCB4.2 |
light harvesting complex photosystem II |
[detail] |
820043 |
| 11.2 |
CAB2 |
chlorophyll A/B-binding protein 2 |
[detail] |
839870 |
| 8.0 |
AT5G48490 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
[detail] |
834905 |
| 4.2 |
PORA |
protochlorophyllide oxidoreductase A |
[detail] |
835507 |
|
Coexpressed
gene list |
[Coexpressed gene list for LHCB2.3]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
258239_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
258239_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
258239_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT3G27690 Gene
