[←][→] ath   AT3G29100 Gene
functional annotation
Function   vesicle transport V-snare 13  
GO BP
GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport  (35 genes)  TAS  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  ISM  
GO:0005739 [list] [network] mitochondrion  (4405 genes)  ISM  
GO:0016021 [list] [network] integral component of membrane  (4803 genes)  IEA  
GO MF
GO:0000149 [list] [network] SNARE binding  (54 genes)  TAS  
KEGG ath04130 [list] [network] SNARE interactions in vesicular transport (44 genes)
Protein NP_001189997.1  NP_001327542.1  NP_001327543.1  NP_001327544.1  NP_189554.2 
BLAST NP_001189997.1  NP_001327542.1  NP_001327543.1  NP_001327544.1  NP_189554.2 
Orthologous [Ortholog page] SGR4 (ath)  VTI1B (ath)  LOC4327678 (osa)  LOC7480581 (ppo)  LOC7492914 (ppo)  LOC7495993 (ppo)  LOC7498189 (ppo)  LOC11412506 (mtr)  LOC11416325 (mtr)  LOC11422160 (mtr)  LOC25488812 (mtr)  LOC100248505 (vvi)  LOC100259152 (vvi)  LOC100280807 (zma)  LOC100500007 (gma)  LOC100527319 (gma)  LOC100801744 (gma)  LOC100815385 (gma)  LOC100816145 (gma)  LOC101266321 (sly)  LOC103829198 (bra)  LOC103837204 (bra)  LOC103849621 (bra)  LOC104647326 (sly) 
Subcellular
localization
wolf
cyto 6,  golg 2,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1  (predict for NP_001189997.1)
cyto 6,  golg 2,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1  (predict for NP_001327542.1)
cyto 6,  golg 2,  vacu 1,  E.R. 1,  cysk 1,  E.R._vacu 1  (predict for NP_001327543.1)
golg 4,  cyto 2,  golg_plas 2,  chlo 1,  cyto_nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001327544.1)
cyto 3,  golg 3,  cyto_E.R. 2,  plas 1,  chlo 1,  nucl 1,  mito 1,  chlo_mito 1,  cysk_plas 1  (predict for NP_189554.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001189997.1)
other 7  (predict for NP_001327542.1)
other 7  (predict for NP_001327543.1)
other 7  (predict for NP_001327544.1)
scret 5,  other 3  (predict for NP_189554.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
ath03040 Spliceosome 2
Genes directly connected with VTI13 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.0 AT3G57170 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein [detail] 824884
4.8 AT2G17975 zinc finger (Ran-binding) family protein [detail] 816309
4.6 AT3G02300 Regulator of chromosome condensation (RCC1) family protein [detail] 821167
4.5 AT5G02650 hypothetical protein [detail] 831848
Coexpressed
gene list		 [Coexpressed gene list for VTI13]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258191_at
258191_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258191_at
258191_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258191_at
258191_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 822557      
Refseq ID (protein) NP_001189997.1 
NP_001327542.1 
NP_001327543.1 
NP_001327544.1 
NP_189554.2 


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