[←][→] ath   At3g44260 Gene
functional annotation
Function   Polynucleotidyl transferase, ribonuclease H-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (5 genes)  IMP  
GO:0002213 [list] [network] defense response to insect  (34 genes)  IEP  
GO:0009611 [list] [network] response to wounding  (816 genes)  IEP  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0008408 [list] [network] 3'-5' exonuclease activity  (18 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_190012.1 
BLAST NP_190012.1 
Orthologous [Ortholog page] CAF1b (ath)  LOC4337457 (osa)  LOC7469961 (ppo)  LOC7485296 (ppo)  LOC18098097 (ppo)  LOC18102215 (ppo)  LOC100500357 (gma)  LOC100781759 (gma)  LOC100790027 (gma)  LOC100805583 (gma)  LOC100811298 (gma)  LOC100817875 (gma)  LOC101248130 (sly)  LOC101248416 (sly)  LOC101254325 (sly)  LOC101258270 (sly)  LOC101268737 (sly)  LOC103845561 (bra)  LOC103848067 (bra)  LOC103851429 (bra)  LOC103856505 (bra)  LOC107275402 (osa)  LOC112324964 (ppo)  LOC112416242 (mtr)  LOC112417479 (mtr)  LOC112417480 (mtr)  LOC112419485 (mtr)  LOC112419659 (mtr)  LOC112419688 (mtr)  LOC112421712 (mtr)  LOC112421767 (mtr)  LOC123047493 (tae)  LOC123055286 (tae)  LOC123082922 (tae)  LOC123152252 (tae)  LOC123152965 (tae)  LOC123168503 (tae)  LOC123191113 (tae)  LOC123408083 (hvu)  LOC123431274 (hvu) 
Subcellular
localization
wolf
cyto 9,  mito 1,  E.R. 1  (predict for NP_190012.1)
Subcellular
localization
TargetP
other 8  (predict for NP_190012.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
Genes directly connected with CAF1a on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
19.8 DIC2 dicarboxylate carrier 2 [detail] 828559
14.3 AT4G27280 Calcium-binding EF-hand family protein [detail] 828836
13.2 STZ salt tolerance zinc finger [detail] 839666
13.1 CAF1b Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 832285
10.4 ERF11 ERF domain protein 11 [detail] 839733
9.6 ERF13 ethylene-responsive element binding factor 13 [detail] 819093
8.0 RTFL12 ROTUNDIFOLIA like 12 [detail] 5008138
Coexpressed
gene list		 [Coexpressed gene list for CAF1a]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252679_at
252679_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252679_at
252679_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252679_at
252679_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823551      
Refseq ID (protein) NP_190012.1 


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