[←][→] ath   AT3G44680 Gene
functional annotation
Function   histone deacetylase 9  
GO BP
GO:1990619 [list] [network] histone H3-K9 deacetylation  (2 genes)  IMP  
GO:0070933 [list] [network] histone H4 deacetylation  (3 genes)  IBA  
GO:0070932 [list] [network] histone H3 deacetylation  (5 genes)  IBA  
GO:0010187 [list] [network] negative regulation of seed germination  (23 genes)  IMP  
GO:1900055 [list] [network] regulation of leaf senescence  (36 genes)  IMP  
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (206 genes)  IBA  
GO CC
GO:0000118 [list] [network] histone deacetylase complex  (13 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IDA  
GO MF
GO:0032041 [list] [network] NAD-dependent histone deacetylase activity (H3-K14 specific)  (12 genes)  IEA  
GO:0004407 [list] [network] histone deacetylase activity  (35 genes)  IBA ISS  
GO:0043565 [list] [network] sequence-specific DNA binding  (796 genes)  IDA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_190054.2 
BLAST NP_190054.2 
Orthologous [Ortholog page] LOC541953 (zma)  LOC4335765 (osa)  LOC7490755 (ppo)  LOC11446252 (mtr)  LOC100240976 (vvi)  LOC100248276 (vvi)  HDA13 (gma)  LOC101251648 (sly)  LOC103873661 (bra) 
Subcellular
localization
wolf
cyto 4,  mito 3,  cyto_pero 3  (predict for NP_190054.2)
Subcellular
localization
TargetP
other 8  (predict for NP_190054.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with HDA9 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.3 AT3G44670 Disease resistance protein (TIR-NBS-LRR class) family [detail] 823593
4.8 UVH6 RAD3-like DNA-binding helicase protein [detail] 839557
4.7 AT3G44370 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein [detail] 823562
4.4 AT4G19010 AMP-dependent synthetase and ligase family protein [detail] 827639
Coexpressed
gene list		 [Coexpressed gene list for HDA9]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252649_at
252649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252649_at
252649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252649_at
252649_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823594      
Refseq ID (protein) NP_190054.2 


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