[←][→] ath   AT3G44750 Gene
functional annotation
Function   histone deacetylase 3  
GO BP
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis  (23 genes)  IMP  
GO:0009294 [list] [network] DNA mediated transformation  (26 genes)  IMP  
GO:0010162 [list] [network] seed dormancy process  (32 genes)  IEP  
GO:0048364 [list] [network] root development  (482 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA TAS  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (35 genes)  IMP ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4187 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001190012.1  NP_566872.1 
BLAST NP_001190012.1  NP_566872.1 
Orthologous [Ortholog page] LOC542355 (zma)  LOC542636 (zma)  HD2A (gma)  HD2C (ath)  LOC4339823 (osa)  LOC9272341 (osa)  LOC11434564 (mtr)  LOC25487509 (mtr)  LOC100252840 (vvi)  LOC100256817 (vvi)  HDT6 (gma)  LOC100792094 (gma)  HDT4 (gma)  HDT2 (gma)  HDT1 (gma)  LOC101244607 (sly)  HDT3 (sly)  LOC101262270 (sly)  LOC103636373 (zma)  LOC103636709 (zma)  LOC103648365 (zma)  LOC103845525 (bra)  LOC103847362 (bra)  LOC103851455 (bra)  LOC103851458 (bra)  LOC103851750 (bra)  LOC103856522 (bra)  LOC112416804 (mtr) 
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for NP_001190012.1)
nucl 8,  chlo 1  (predict for NP_566872.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190012.1)
other 8  (predict for NP_566872.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03010 Ribosome 2
Genes directly connected with HDA3 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.6 AT5G27120 NOP56-like pre RNA processing ribonucleoprotein [detail] 832770
13.6 FIB2 fibrillarin 2 [detail] 828668
12.7 AT3G18600 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 821391
12.4 AT1G52930 Ribosomal RNA processing Brix domain protein [detail] 841726
11.8 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [detail] 826873
11.4 HD2B histone deacetylase 2B [detail] 832328
10.1 GRP4 glycine-rich RNA-binding protein 4 [detail] 821966
9.8 AT4G30800 Nucleic acid-binding, OB-fold-like protein [detail] 829203
8.2 MEE67 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [detail] 820172
Coexpressed
gene list		 [Coexpressed gene list for HDA3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252625_at
252625_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252625_at
252625_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252625_at
252625_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823605      
Refseq ID (protein) NP_001190012.1 
NP_566872.1 


The preparation time of this page was 0.3 [sec].