[←][→] ath   At3g44750 Gene
functional annotation
Function   histone deacetylase 3    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009944 [list] [network] polarity specification of adaxial/abaxial axis  (23 genes)  IMP  
GO:0009294 [list] [network] DNA-mediated transformation  (26 genes)  IMP  
GO:0010162 [list] [network] seed dormancy process  (49 genes)  IEP  
GO:0048364 [list] [network] root development  (1192 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA TAS  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (16 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_001190012.1  NP_566872.1 
BLAST NP_001190012.1  NP_566872.1 
Orthologous [Ortholog page] HD2A (gma)  LOC780626 (tae)  HDT4 (ath)  HD2C (ath)  HD2B (ath)  LOC4339823 (osa)  LOC7474933 (ppo)  LOC11434112 (mtr)  LOC11434564 (mtr)  LOC18097993 (ppo)  LOC18100075 (ppo)  LOC25487509 (mtr)  HDT6 (gma)  LOC100792094 (gma)  HDT4 (gma)  HDT2 (gma)  HDT1 (gma)  LOC101244607 (sly)  HDT3 (sly)  LOC101262270 (sly)  LOC103845525 (bra)  LOC103847362 (bra)  LOC103851455 (bra)  LOC103851458 (bra)  LOC103851750 (bra)  LOC103851751 (bra)  LOC103856522 (bra)  LOC103864807 (bra)  LOC107277645 (osa)  LOC112416804 (mtr)  LOC123050863 (tae)  LOC123066145 (tae)  LOC123071217 (tae)  LOC123075202 (tae)  LOC123161746 (tae)  LOC123183440 (tae)  LOC123408500 (hvu)  LOC123445159 (hvu)  LOC123452961 (hvu) 
Subcellular
localization
wolf
nucl 7,  chlo 2  (predict for NP_001190012.1)
nucl 8,  chlo 1  (predict for NP_566872.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001190012.1)
other 8  (predict for NP_566872.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03010 Ribosome 2
Genes directly connected with HDA3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
14.5 FIB2 fibrillarin 2 [detail] 828668
13.9 AT3G18600 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 821391
13.4 AT5G27120 NOP56-like pre RNA processing ribonucleoprotein [detail] 832770
13.3 AT1G52930 Ribosomal RNA processing Brix domain protein [detail] 841726
12.4 HD2B histone deacetylase 2B [detail] 832328
12.2 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [detail] 826873
10.6 AT4G30800 Nucleic acid-binding, OB-fold-like protein [detail] 829203
10.6 PRMT1A protein arginine methyltransferase 1A [detail] 816486
10.3 GRP4 glycine-rich RNA-binding protein 4 [detail] 821966
Coexpressed
gene list		 [Coexpressed gene list for HDA3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252625_at
252625_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252625_at
252625_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252625_at
252625_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823605      
Refseq ID (protein) NP_001190012.1 
NP_566872.1 


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