[←][→] ath   At3g47470 Gene
functional annotation
Function   light-harvesting chlorophyll-protein complex I subunit A4      
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (10 genes)  IDA  
GO:0009645 [list] [network] response to low light intensity stimulus  (33 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (65 genes)  IEP  
GO:0009409 [list] [network] response to cold  (472 genes)  IEP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (315 genes)  HDA IDA  
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (582 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (21 genes)  NAS  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  IDA  
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
Protein NP_190331.3 
BLAST NP_190331.3 
Orthologous [Ortholog page] LOC4345663 (osa)  LOC18105790 (ppo)  LOC25490405 (mtr)  LOC100798548 (gma)  LOC100802922 (gma)  CAB12 (sly)  CAB11 (sly)  LOC103873241 (bra)  LOC123103904 (tae)  LOC123112135 (tae)  LOC123121683 (tae)  LOC123398322 (hvu) 
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for NP_190331.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190331.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00196 Photosynthesis - antenna proteins 12
ath00195 Photosynthesis 3
Genes directly connected with LHCA4 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
22.9 LHCB3 light-harvesting chlorophyll B-binding protein 3 [detail] 835515
22.5 LHCA1 chlorophyll a-b binding protein 6 [detail] 824654
21.0 LHCA3 PSI type III chlorophyll a/b-binding protein [detail] 842446
17.0 LHCB4.2 light harvesting complex photosystem II [detail] 820043
13.3 AT5G19940 Plastid-lipid associated protein PAP / fibrillin family protein [detail] 832116
5.2 AT3G46630 DCL protein (DUF3223) [detail] 823816
Coexpressed
gene list		 [Coexpressed gene list for LHCA4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252430_at
252430_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252430_at
252430_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252430_at
252430_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823901      
Refseq ID (protein) NP_190331.3 


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