| functional annotation |
| Function |
Serine/Threonine-kinase ATM-like protein |
|
| GO BP |
|
GO:0043247 [list] [network] telomere maintenance in response to DNA damage
|
(6 genes)
|
TAS
|
 |
|
GO:0045003 [list] [network] double-strand break repair via synthesis-dependent strand annealing
|
(7 genes)
|
IMP
|
|
|
GO:0032204 [list] [network] regulation of telomere maintenance
|
(10 genes)
|
IGI
|
|
|
GO:0006303 [list] [network] double-strand break repair via nonhomologous end joining
|
(16 genes)
|
IMP
|
|
|
GO:0010332 [list] [network] response to gamma radiation
|
(16 genes)
|
IMP
|
|
|
GO:0010212 [list] [network] response to ionizing radiation
|
(26 genes)
|
IMP
|
|
|
GO:0007129 [list] [network] synapsis
|
(28 genes)
|
IGI
|
|
|
GO:2001020 [list] [network] regulation of response to DNA damage stimulus
|
(40 genes)
|
IMP
|
|
|
GO:0007131 [list] [network] reciprocal meiotic recombination
|
(49 genes)
|
IMP
|
|
|
GO:0033044 [list] [network] regulation of chromosome organization
|
(99 genes)
|
IGI
|
|
|
GO:0051321 [list] [network] meiotic cell cycle
|
(166 genes)
|
IEA
IMP
|
|
|
GO:0032504 [list] [network] multicellular organism reproduction
|
(180 genes)
|
IGI
|
|
|
GO:0008380 [list] [network] RNA splicing
|
(272 genes)
|
IMP
|
|
|
GO:0006281 [list] [network] DNA repair
|
(295 genes)
|
IMP
|
|
|
GO:0006974 [list] [network] cellular response to DNA damage stimulus
|
(329 genes)
|
IEA
IMP
|
|
|
| GO CC |
|
| GO MF |
|
GO:0000285 [list] [network] 1-phosphatidylinositol-3-phosphate 5-kinase activity
|
(5 genes)
|
TAS
|
|
|
GO:0004674 [list] [network] protein serine/threonine kinase activity
|
(801 genes)
|
IEA
|
|
|
GO:0005524 [list] [network] ATP binding
|
(2003 genes)
|
IEA
|
|
|
GO:0003677 [list] [network] DNA binding
|
(2280 genes)
|
IEA
|
|
|
GO:0005515 [list] [network] protein binding
|
(4605 genes)
|
IPI
|
|
|
| KEGG |
ath03440 [list] [network] Homologous recombination (67 genes) |
 |
| Protein |
NP_001319707.1
NP_001326745.1
NP_001326746.1
|
| BLAST |
NP_001319707.1
NP_001326745.1
NP_001326746.1
|
| Orthologous |
[Ortholog page]
LOC4326151 (osa)
LOC11443014 (mtr)
LOC100250198 (vvi)
LOC100788458 (gma)
LOC101253578 (sly)
LOC103651852 (zma)
LOC103873550 (bra)
|
Subcellular
localization
wolf |
|
nucl 7,
cyto 2
|
(predict for NP_001319707.1)
|
|
chlo 4,
nucl 3,
cysk_nucl 2,
mito 1,
extr 1,
vacu 1,
E.R. 1,
E.R._vacu 1
|
(predict for NP_001326745.1)
|
|
chlo 4,
nucl 3,
cysk_nucl 2,
mito 1,
extr 1,
vacu 1,
E.R. 1,
E.R._vacu 1
|
(predict for NP_001326746.1)
|
|
Subcellular
localization
TargetP |
|
other 8
|
(predict for NP_001319707.1)
|
|
other 8
|
(predict for NP_001326745.1)
|
|
other 8
|
(predict for NP_001326746.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
Genes directly connected with ATM on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 10.2 |
AT2G17930 |
Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein |
[detail] |
816303 |
| 9.5 |
SYD |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
[detail] |
817375 |
| 8.6 |
AT5G61140 |
U5 small nuclear ribonucleoprotein helicase |
[detail] |
836235 |
| 7.8 |
AT4G38350 |
Patched family protein |
[detail] |
829992 |
| 7.7 |
emb1427 |
Spc97 / Spc98 family of spindle pole body (SBP) component |
[detail] |
844366 |
| 7.4 |
DCL2 |
dicer-like 2 |
[detail] |
821300 |
| 6.3 |
GCN2 |
protein kinase family protein |
[detail] |
825110 |
| 3.7 |
HAC4 |
histone acetyltransferase of the CBP family 4 |
[detail] |
842048 |
|
Coexpressed
gene list |
[Coexpressed gene list for ATM]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
252350_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
252350_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
252350_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT3G48190 Gene
