ATTED-II : GeneID search result

[←][→] ath At3g49010 Gene

functional annotation

Function

breast basic conserved 1

Plant GARDEN Plant GARDEN JBrowse

GO BP

GO:0006412 [list] [network] translation

(911 genes)

IEA TAS

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(124 genes)	HDA
GO:0022626 [list] [network] cytosolic ribosome	(295 genes)	HDA
GO:0005840 [list] [network] ribosome	(322 genes)	TAS
GO:0005730 [list] [network] nucleolus	(387 genes)	HDA
GO:0009505 [list] [network] plant-type cell wall	(498 genes)	HDA
GO:0000325 [list] [network] plant-type vacuole	(785 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(871 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1182 genes)	RCA
GO:0005829 [list] [network] cytosol	(2559 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISM

GO MF

GO:0003735 [list] [network] structural constituent of ribosome	(63 genes)	ISS
GO:0003729 [list] [network] mRNA binding	(1535 genes)	HDA IDA

KEGG

ath03010 [list] [network] Ribosome (359 genes)

Protein

NP_001030831.1 NP_001078260.1 NP_001078261.1 NP_001327179.1 NP_001327180.1 NP_190470.1 NP_850672.1

BLAST

NP_001030831.1 NP_001078260.1 NP_001078261.1 NP_001327179.1 NP_001327180.1 NP_190470.1 NP_850672.1

Orthologous

[Ortholog page] LOC542943 (tae) AT5G23900 (ath) LOC4333306 (osa) LOC4339923 (osa) LOC7467594 (ppo) LOC7473881 (ppo) LOC7491903 (ppo) LOC11410980 (mtr) LOC11426640 (mtr) LOC18094068 (ppo) LOC25482128 (mtr) LOC100305489 (gma) LOC100499935 (gma) LOC100782333 (gma) LOC100805957 (gma) LOC101262297 (sly) LOC101264241 (sly) LOC103873096 (bra) LOC103873508 (bra) LOC103874976 (bra) LOC123131777 (tae) LOC123135654 (tae) LOC123147139 (tae) LOC123162399 (tae) LOC123165450 (tae) LOC123401771 (hvu) LOC123407934 (hvu)

Subcellular
localization
wolf

chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001030831.1)
chlo 7, nucl 1, cyto 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001078260.1)
chlo 6, nucl 3, chlo_mito 3	(predict for NP_001078261.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001327179.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001327180.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_190470.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_850672.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for NP_001030831.1)
other 6, chlo 3	(predict for NP_001078260.1)
other 5, chlo 4	(predict for NP_001078261.1)
other 6, chlo 3	(predict for NP_001327179.1)
other 6, chlo 3	(predict for NP_001327180.1)
other 6, chlo 3	(predict for NP_190470.1)
other 6, chlo 3	(predict for NP_850672.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

Genes directly connected with BBC1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
18.4	AT2G01250	Ribosomal protein L30/L7 family protein	[detail]	814652
16.9	AT3G07110	Ribosomal protein L13 family protein	[detail]	819897
16.7	AT2G34480	Ribosomal protein L18ae/LX family protein	[detail]	818011
16.6	AT3G62870	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[detail]	825462
16.0	AT1G67430	Ribosomal protein L22p/L17e family protein	[detail]	843063
15.3	AT5G16130	Ribosomal protein S7e family protein	[detail]	831470
15.3	AT3G60770	Ribosomal protein S13/S15	[detail]	825248
15.2	AT1G27400	Ribosomal protein L22p/L17e family protein	[detail]	839630
15.1	RPL18	ribosomal protein L18	[detail]	819725
14.1	AT5G04800	Ribosomal S17 family protein	[detail]	830359
13.8	AT4G29410	Ribosomal L28e protein family	[detail]	829062

Coexpressed
gene list

[Coexpressed gene list for BBC1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252294_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252294_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252294_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824062
Refseq ID (protein)	NP_001030831.1
	NP_001078260.1
	NP_001078261.1
	NP_001327179.1
	NP_001327180.1
	NP_190470.1
	NP_850672.1

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