ATTED-II : GeneID search result

[←][→] ath AT3G49010 Gene

functional annotation

Function

breast basic conserved 1

GO BP

GO:0006412 [list] [network] translation

(1149 genes)

IEA TAS

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(136 genes)	IDA
GO:0022626 [list] [network] cytosolic ribosome	(317 genes)	IDA
GO:0005840 [list] [network] ribosome	(463 genes)	TAS
GO:0005730 [list] [network] nucleolus	(477 genes)	IDA
GO:0005774 [list] [network] vacuolar membrane	(624 genes)	IDA
GO:0005618 [list] [network] cell wall	(685 genes)	IDA
GO:0009506 [list] [network] plasmodesma	(962 genes)	IDA
GO:0005794 [list] [network] Golgi apparatus	(1430 genes)	RCA
GO:0005829 [list] [network] cytosol	(3506 genes)	HDA IDA
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0003735 [list] [network] structural constituent of ribosome	(248 genes)	ISS
GO:0003729 [list] [network] mRNA binding	(1026 genes)	IDA

KEGG

ath03010 [list] [network] Ribosome (356 genes)

Protein

NP_001030831.1 NP_001078260.1 NP_001078261.1 NP_001327179.1 NP_001327180.1 NP_190470.1 NP_850672.1

BLAST

NP_001030831.1 NP_001078260.1 NP_001078261.1 NP_001327179.1 NP_001327180.1 NP_190470.1 NP_850672.1

Orthologous

[Ortholog page] AT5G23900 (ath) LOC4333306 (osa) LOC4339923 (osa) LOC7467594 (ppo) LOC7473881 (ppo) LOC7491903 (ppo) LOC11410980 (mtr) LOC11426640 (mtr) LOC25482128 (mtr) LOC100246745 (vvi) LOC100257471 (vvi) LOC100273645 (zma) LOC100282254 (zma) LOC100286371 (zma) LOC100305489 (gma) LOC100499935 (gma) LOC100782333 (gma) LOC100805957 (gma) LOC101262297 (sly) LOC101264241 (sly) LOC103873096 (bra) LOC103873508 (bra) LOC103874976 (bra)

Subcellular
localization
wolf

chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001030831.1)
chlo 7, nucl 1, cyto 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001078260.1)
chlo 6, nucl 3, chlo_mito 3	(predict for NP_001078261.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001327179.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_001327180.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_190470.1)
chlo 6, nucl 1, cyto 1, mito 1, pero 1, cysk_nucl 1, nucl_plas 1, cyto_pero 1	(predict for NP_850672.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for NP_001030831.1)
other 6, chlo 3	(predict for NP_001078260.1)
other 5, chlo 4	(predict for NP_001078261.1)
other 6, chlo 3	(predict for NP_001327179.1)
other 6, chlo 3	(predict for NP_001327180.1)
other 6, chlo 3	(predict for NP_190470.1)
other 6, chlo 3	(predict for NP_850672.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21

Genes directly connected with BBC1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
18.2	AT2G01250	Ribosomal protein L30/L7 family protein	[detail]	814652
16.3	AT3G07110	Ribosomal protein L13 family protein	[detail]	819897
16.1	AT2G34480	Ribosomal protein L18ae/LX family protein	[detail]	818011
15.5	RPL18	ribosomal protein L18	[detail]	819725
15.3	AT5G16130	Ribosomal protein S7e family protein	[detail]	831470
15.2	AT3G60770	Ribosomal protein S13/S15	[detail]	825248
14.6	AT1G27400	Ribosomal protein L22p/L17e family protein	[detail]	839630
14.4	AT5G04800	Ribosomal S17 family protein	[detail]	830359
14.2	AT1G67430	Ribosomal protein L22p/L17e family protein	[detail]	843063
13.3	AT3G47370	Ribosomal protein S10p/S20e family protein	[detail]	823891
12.1	AT5G09510	Ribosomal protein S19 family protein	[detail]	830810
6.7	AT2G04390	Ribosomal S17 family protein	[detail]	814978

Coexpressed
gene list

[Coexpressed gene list for BBC1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252294_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252294_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252294_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824062
Refseq ID (protein)	NP_001030831.1
	NP_001078260.1
	NP_001078261.1
	NP_001327179.1
	NP_001327180.1
	NP_190470.1
	NP_850672.1

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