[←][→] ath   AT3G51310 Gene
functional annotation
Function   VPS35 homolog C  
GO BP
GO:0008333 [list] [network] endosome to lysosome transport  (6 genes)  ISS  
GO:0042147 [list] [network] retrograde transport, endosome to Golgi  (24 genes)  IBA  
GO:0006886 [list] [network] intracellular protein transport  (516 genes)  IBA  
GO CC
GO:0030906 [list] [network] retromer, cargo-selective complex  (2 genes)  IEA  
GO:0030904 [list] [network] retromer complex  (9 genes)  IBA IDA ISS  
GO:0005771 [list] [network] multivesicular body  (20 genes)  IDA  
GO:0031902 [list] [network] late endosome membrane  (61 genes)  IEA  
GO:0005770 [list] [network] late endosome  (91 genes)  IBA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IEA  
GO:0016020 [list] [network] membrane  (7839 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  ISM  
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (19648 genes)  IDA  
GO MF
KEGG
Protein NP_190699.3 
BLAST NP_190699.3 
Orthologous [Ortholog page] VPS35A (ath)  VPS35B (ath)  LOC4334459 (osa)  LOC7496914 (ppo)  LOC11413082 (mtr)  LOC11423814 (mtr)  LOC100243826 (vvi)  LOC100248964 (vvi)  LOC100279276 (zma)  LOC100285267 (zma)  LOC100775573 (gma)  LOC100778365 (gma)  LOC100809289 (gma)  LOC100811902 (gma)  LOC101243768 (sly)  LOC101249253 (sly)  LOC101265987 (sly)  LOC103832036 (bra)  LOC103841052 (bra)  LOC103845916 (bra) 
Subcellular
localization
wolf
cyto 6,  chlo 4  (predict for NP_190699.3)
Subcellular
localization
TargetP
other 7,  scret 3  (predict for NP_190699.3)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 2
Genes directly connected with VPS35C on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.8 NQR ARP protein (REF) [detail] 841391
6.7 PAS1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein [detail] 824568
6.4 HIT1 Membrane trafficking VPS53 family protein [detail] 841472
6.4 NUDT3 nudix hydrolase homolog 3 [detail] 844308
5.7 OTS2 Cysteine proteinases superfamily protein [detail] 837598
5.5 XK-2 xylulose kinase-2 [detail] 835027
Coexpressed
gene list		 [Coexpressed gene list for VPS35C]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252150_at
252150_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252150_at
252150_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252150_at
252150_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824294      
Refseq ID (protein) NP_190699.3 


The preparation time of this page was 0.3 [sec].