[←][→] ath   At3g53190 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO:0003002 [list] [network] regionalization  (227 genes)  IEA  
GO:0048437 [list] [network] floral organ development  (278 genes)  IEA  
GO:0048507 [list] [network] meristem development  (457 genes)  IEA  
GO:0048827 [list] [network] phyllome development  (732 genes)  IEA  
GO:0048589 [list] [network] developmental growth  (1060 genes)  IEA  
GO:0044085 [list] [network] cellular component biogenesis  (1358 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO:0016020 [list] [network] membrane  (3629 genes)  TAS  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_566979.1 
BLAST NP_566979.1 
Orthologous [Ortholog page] 9612 (sly)  AT3G07010 (ath)  AT3G24230 (ath)  AT3G24670 (ath)  AT3G27400 (ath)  PMR6 (ath)  AT4G13210 (ath)  AT4G13710 (ath)  AT4G24780 (ath)  AT5G04310 (ath)  AT5G48900 (ath)  AT5G63180 (ath)  AT1G04680 (ath)  AT1G67750 (ath)  LOC4335013 (osa)  LOC4348800 (osa)  LOC7453817 (ppo)  LOC7458080 (ppo)  LOC7460526 (ppo)  LOC7467675 (ppo)  LOC7468445 (ppo)  LOC7469382 (ppo)  LOC7477066 (ppo)  LOC7479851 (ppo)  LOC7481246 (ppo)  LOC7488611 (ppo)  LOC7494805 (ppo)  LOC11408829 (mtr)  LOC11409358 (mtr)  LOC11411484 (mtr)  LOC11426383 (mtr)  LOC18100132 (ppo)  LOC25483116 (mtr)  LOC25483947 (mtr)  LOC25485548 (mtr)  LOC25489517 (mtr)  LOC25499338 (mtr)  LOC100101868 (gma)  LOC100775595 (gma)  LOC100779940 (gma)  LOC100781845 (gma)  LOC100782388 (gma)  LOC100787082 (gma)  LOC100789303 (gma)  LOC100790659 (gma)  LOC100794814 (gma)  LOC100808438 (gma)  LOC100809277 (gma)  LOC100810380 (gma)  LOC100814679 (gma)  LOC100815062 (gma)  LOC100816256 (gma)  LOC101244298 (sly)  LOC101252082 (sly)  PL (sly)  LOC101254639 (sly)  LOC101257697 (sly)  LOC101260911 (sly)  LOC101263458 (sly)  LOC101264881 (sly)  LOC101264933 (sly)  LOC103828610 (bra)  LOC103828688 (bra)  LOC103829999 (bra)  LOC103831011 (bra)  LOC103831201 (bra)  LOC103833411 (bra)  LOC103834896 (bra)  LOC103836561 (bra)  LOC103837270 (bra)  LOC103837461 (bra)  LOC103841243 (bra)  LOC103841403 (bra)  LOC103843635 (bra)  LOC103844229 (bra)  LOC103847312 (bra)  LOC103850282 (bra)  LOC103852424 (bra)  LOC103854567 (bra)  LOC103855563 (bra)  LOC103861505 (bra)  LOC103862557 (bra)  LOC103863605 (bra)  LOC103863641 (bra)  LOC103870710 (bra)  LOC103873738 (bra)  LOC103875221 (bra)  LOC112323533 (ppo)  LOC123043123 (tae)  LOC123044722 (tae)  LOC123051018 (tae)  LOC123119621 (tae)  LOC123180958 (tae)  LOC123186967 (tae)  LOC123430122 (hvu)  LOC123431519 (hvu) 
Subcellular
localization
wolf
plas 5,  golg_plas 4,  golg 2,  E.R. 1  (predict for NP_566979.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_566979.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
ath00040 Pentose and glucuronate interconversions 2
Genes directly connected with AT3G53190 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.5 AT2G25270 uncharacterized protein [detail] 817065
9.6 ATLP-1 Pathogenesis-related thaumatin superfamily protein [detail] 838405
8.8 AT4G38660 Pathogenesis-related thaumatin superfamily protein [detail] 830022
7.6 CYCD3;1 CYCLIN D3;1 [detail] 829564
7.5 EXPA6 expansin A6 [detail] 817444
6.5 TRN2 Tetraspanin family protein [detail] 834713
6.5 AT1G29980 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [detail] 839877
5.6 GH9B1 glycosyl hydrolase 9B1 [detail] 843408
Coexpressed
gene list		 [Coexpressed gene list for AT3G53190]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251982_at
251982_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251982_at
251982_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251982_at
251982_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824485      
Refseq ID (protein) NP_566979.1 


The preparation time of this page was 0.1 [sec].