ATTED-II : GeneID search result

[←][→] ath At3g53260 Gene

functional annotation

Function

phenylalanine ammonia-lyase 2

GO BP

GO:0006559 [list] [network] L-phenylalanine catabolic process	(5 genes)	IGI
GO:0009800 [list] [network] cinnamic acid biosynthetic process	(5 genes)	IEA
GO:0009699 [list] [network] phenylpropanoid biosynthetic process	(87 genes)	TAS
GO:0006979 [list] [network] response to oxidative stress	(545 genes)	IEP
GO:0009611 [list] [network] response to wounding	(816 genes)	TAS
GO:0006952 [list] [network] defense response	(2370 genes)	TAS

GO CC

GO:0005737 [list] [network] cytoplasm

(13880 genes)

ISM

GO MF

GO:0045548 [list] [network] phenylalanine ammonia-lyase activity	(3 genes)	ISS TAS
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

ath00360 [list] [network] Phenylalanine metabolism (33 genes)

ath00940 [list] [network] Phenylpropanoid biosynthesis (128 genes)

Protein

NP_190894.1

BLAST

NP_190894.1

Orthologous

[Ortholog page] LOC542819 (tae) PAL1 (ath) PAL4 (ath) PAL3 (ath) LOC4330034 (osa) LOC4330036 (osa) LOC4330037 (osa) LOC4330040 (osa) LOC4336415 (osa) LOC4338861 (osa) LOC7463441 (ppo) LOC7463442 (ppo) LOC7479878 (ppo) LOC7486485 (ppo) LOC9271676 (osa) LOC11414166 (mtr) LOC11429351 (mtr) LOC11434138 (mtr) LOC18100180 (ppo) LOC25487825 (mtr) LOC25499316 (mtr) LOC25499317 (mtr) PAL2.1 (gma) PAL3.1 (gma) PAL1.3 (gma) PAL1.2 (gma) PAL2.4 (gma) PAL2.3 (gma) PAL1.1 (gma) PAL2.2 (gma) LOC101243631 (sly) LOC101243656 (sly) PAL3 (sly) PAL5 (sly) LOC101246969 (sly) LOC101247265 (sly) PAL2 (sly) LOC101253989 (sly) LOC101261892 (sly) LOC103829920 (bra) LOC103841251 (bra) LOC103863433 (bra) LOC103864245 (bra) LOC103865574 (bra) LOC103867229 (bra) LOC103870475 (bra) LOC112941051 (sly) LOC120576914 (mtr) LOC123044473 (tae) LOC123046102 (tae) LOC123046106 (tae) LOC123052332 (tae) LOC123052335 (tae) LOC123053982 (tae) LOC123053983 (tae) LOC123053984 (tae) LOC123053985 (tae) LOC123053986 (tae) LOC123057580 (tae) LOC123064383 (tae) LOC123105222 (tae) LOC123113082 (tae) LOC123113856 (tae) LOC123113857 (tae) LOC123137535 (tae) LOC123137536 (tae) LOC123144878 (tae) LOC123180007 (tae) LOC123187336 (tae) LOC123189878 (tae) LOC123189879 (tae) LOC123189880 (tae) LOC123401027 (hvu) LOC123401735 (hvu) LOC123404696 (hvu) LOC123425614 (hvu) LOC123425618 (hvu) LOC123425729 (hvu) LOC123425763 (hvu) LOC123425766 (hvu) LOC123425768 (hvu) LOC123425770 (hvu) LOC123425773 (hvu) LOC123427251 (hvu) LOC123427252 (hvu) LOC123427253 (hvu) LOC123427254 (hvu) LOC123439223 (hvu)

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 1, vacu 1

(predict for NP_190894.1)

Subcellular
localization
TargetP

other 9

(predict for NP_190894.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	13
ath01230	Biosynthesis of amino acids	6
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
ath00941	Flavonoid biosynthesis	4
ath00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

Genes directly connected with PAL2 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
20.8	PAL1	PHE ammonia lyase 1	[detail]	818280
12.3	4CL1	4-coumarate:CoA ligase 1	[detail]	841593
12.0	C4H	cinnamate-4-hydroxylase	[detail]	817599
7.8	ADT4	arogenate dehydratase 4	[detail]	823601

Coexpressed
gene list

[Coexpressed gene list for PAL2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251984_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251984_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251984_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824493
Refseq ID (protein)	NP_190894.1

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