ATTED-II : GeneID search result

[←][→] ath AT3G53350 Gene

functional annotation

Function

ROP interactive partner 4

GO BP

GO:0043622 [list] [network] cortical microtubule organization	(34 genes)	IDA
GO:0009664 [list] [network] plant-type cell wall organization	(145 genes)	IDA

GO CC

GO:0005874 [list] [network] microtubule	(186 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3363 genes)	ISM
GO:0005886 [list] [network] plasma membrane	(3771 genes)	IEA
GO:0005634 [list] [network] nucleus	(10793 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(4605 genes)

IPI

KEGG

Protein

NP_001326317.1 NP_001326318.1 NP_001326319.1 NP_001326320.1 NP_001326321.1 NP_001326322.1 NP_190903.2 NP_974423.1 NP_974424.1

BLAST

NP_001326317.1 NP_001326318.1 NP_001326319.1 NP_001326320.1 NP_001326321.1 NP_001326322.1 NP_190903.2 NP_974423.1 NP_974424.1

Orthologous

[Ortholog page] LOC103841260 (bra)

Subcellular
localization
wolf

nucl 4, cyto 1, cysk 1, E.R._plas 1, plas 1, E.R. 1, mito 1, vacu 1, cyto_pero 1	(predict for NP_001326317.1)
nucl 6, cyto 2, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1	(predict for NP_001326318.1)
nucl 4, cyto 1, cysk 1, E.R._plas 1, plas 1, E.R. 1, mito 1, vacu 1, cyto_pero 1	(predict for NP_001326319.1)
nucl 6, cyto 2, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1	(predict for NP_001326320.1)
chlo 6, mito 3, cyto 1, E.R. 1, cyto_E.R. 1	(predict for NP_001326321.1)
nucl 4, cysk 1, E.R._plas 1, plas 1, E.R. 1, chlo 1, mito 1, vacu 1, golg 1, chlo_mito 1	(predict for NP_001326322.1)
nucl 6, cyto 2, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1	(predict for NP_190903.2)
nucl 6, cyto 1, mito 1	(predict for NP_974423.1)
nucl 6, cyto 1, mito 1	(predict for NP_974424.1)

Subcellular
localization
TargetP

chlo 3	(predict for NP_001326317.1)
chlo 7	(predict for NP_001326318.1)
chlo 3	(predict for NP_001326319.1)
chlo 7	(predict for NP_001326320.1)
chlo 4, other 4	(predict for NP_001326321.1)
chlo 4	(predict for NP_001326322.1)
chlo 7	(predict for NP_190903.2)
chlo 7	(predict for NP_974423.1)
chlo 7	(predict for NP_974424.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with RIP3 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.4	AT3G05270	filament-like protein (DUF869)	[detail]	819691
5.7	AT3G02930	weak chloroplast movement under blue light protein (DUF827)	[detail]	821180
5.6	AT5G52280	Myosin heavy chain-related protein	[detail]	835304
4.7	AT2G03810	18S pre-ribosomal assembly protein gar2-like protein	[detail]	814907

Coexpressed
gene list

[Coexpressed gene list for RIP3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251992_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251992_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251992_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824503
Refseq ID (protein)	NP_001326317.1
	NP_001326318.1
	NP_001326319.1
	NP_001326320.1
	NP_001326321.1
	NP_001326322.1
	NP_190903.2
	NP_974423.1
	NP_974424.1

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