[←][→] ath   AT3G53460 Gene
functional annotation
Function   chloroplast RNA-binding protein 29  
GO BP
GO:0043489 [list] [network] RNA stabilization  (8 genes)  IMP  
GO:0009631 [list] [network] cold acclimation  (59 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (272 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (376 genes)  IEA  
GO:0009409 [list] [network] response to cold  (411 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (831 genes)  IMP  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (474 genes)  IDA  
GO:0009579 [list] [network] thylakoid  (543 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  HDA IDA IEA ISM  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (28 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1026 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IDA ISS  
KEGG
Protein NP_001190078.1  NP_001190079.1  NP_190914.1  NP_850692.2 
BLAST NP_001190078.1  NP_001190079.1  NP_190914.1  NP_850692.2 
Orthologous [Ortholog page] AT2G37220 (ath)  LOC4332957 (osa)  LOC4344001 (osa)  LOC7486483 (ppo)  LOC11433272 (mtr)  LOC100246501 (vvi)  LOC100274547 (zma)  LOC100282223 (zma)  LOC100285364 (zma)  LOC100786275 (gma)  LOC100812934 (gma)  LOC101245790 (sly)  LOC101255645 (sly)  LOC103841271 (bra)  LOC103857667 (bra)  LOC103865583 (bra)  LOC103867216 (bra) 
Subcellular
localization
wolf
chlo 10  (predict for NP_001190078.1)
chlo 10  (predict for NP_001190079.1)
chlo 10  (predict for NP_190914.1)
chlo 10  (predict for NP_850692.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001190078.1)
chlo 9  (predict for NP_001190079.1)
chlo 9  (predict for NP_190914.1)
chlo 9  (predict for NP_850692.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
Genes directly connected with CP29 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
12.1 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 818299
11.0 PTAC6 plastid transcriptionally active 6 [detail] 838761
9.5 PTAC17 plastid transcriptionally active 17 [detail] 844387
5.5 AT1G49650 alpha/beta-Hydrolases superfamily protein [detail] 841389
Coexpressed
gene list		 [Coexpressed gene list for CP29]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251956_at
251956_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251956_at
251956_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251956_at
251956_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824514      
Refseq ID (protein) NP_001190078.1 
NP_001190079.1 
NP_190914.1 
NP_850692.2 


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